(12 nodes) Retromer complex network (Anser cygnoides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TBC1D5	TBC1 domain family member 5 isoform X1. (827 aa)
	ENSACDP00005000177	Vacuolar protein sorting-associated protein 29-like. (185 aa)
	SNX12	Sorting nexin-3/12. (216 aa)
	SNX3	Sorting nexin-3/12. (162 aa)
	SNX27	Sorting nexin-27. (717 aa)
	VPS35	Vacuolar protein sorting-associated protein 35. (767 aa)
	DENND4C	LOW QUALITY PROTEIN: DENN domain-containing protein 4C. (1953 aa)
	VPS29	Vacuolar protein sorting-associated protein 29. (187 aa)
	VPS26A	VPS26, retromer complex component A. (322 aa)
	VPS26B	Vacuolar protein sorting-associated protein 26B. (336 aa)
	SNX1	Sorting nexin-1/2. (571 aa)
	SNX2	Sorting nexin 2. (488 aa)

Your Current Organism:

Anser cygnoides

NCBI taxonomy Id: 8845
Other names: A. cygnoides, Chinese goose, Swan goose, white Chinese goose

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DENND4C	SNX2	ENSACDP00005008361	ENSACDP00005026475	LOW QUALITY PROTEIN: DENN domain-containing protein 4C.	Sorting nexin 2.	0.694
DENND4C	TBC1D5	ENSACDP00005008361	ENSACDP00005019033	LOW QUALITY PROTEIN: DENN domain-containing protein 4C.	TBC1 domain family member 5 isoform X1.	0.518
DENND4C	VPS29	ENSACDP00005008361	ENSACDP00005011318	LOW QUALITY PROTEIN: DENN domain-containing protein 4C.	Vacuolar protein sorting-associated protein 29.	0.696
DENND4C	VPS35	ENSACDP00005008361	ENSACDP00005007795	LOW QUALITY PROTEIN: DENN domain-containing protein 4C.	Vacuolar protein sorting-associated protein 35.	0.699
ENSACDP00005000177	SNX1	ENSACDP00005000177	ENSACDP00005018383	Vacuolar protein sorting-associated protein 29-like.	Sorting nexin-1/2.	0.825
ENSACDP00005000177	SNX12	ENSACDP00005000177	ENSACDP00005002164	Vacuolar protein sorting-associated protein 29-like.	Sorting nexin-3/12.	0.699
ENSACDP00005000177	SNX2	ENSACDP00005000177	ENSACDP00005026475	Vacuolar protein sorting-associated protein 29-like.	Sorting nexin 2.	0.825
ENSACDP00005000177	SNX27	ENSACDP00005000177	ENSACDP00005006375	Vacuolar protein sorting-associated protein 29-like.	Sorting nexin-27.	0.758
ENSACDP00005000177	SNX3	ENSACDP00005000177	ENSACDP00005003847	Vacuolar protein sorting-associated protein 29-like.	Sorting nexin-3/12.	0.699
ENSACDP00005000177	TBC1D5	ENSACDP00005000177	ENSACDP00005019033	Vacuolar protein sorting-associated protein 29-like.	TBC1 domain family member 5 isoform X1.	0.917
ENSACDP00005000177	VPS26A	ENSACDP00005000177	ENSACDP00005015429	Vacuolar protein sorting-associated protein 29-like.	VPS26, retromer complex component A.	0.881
ENSACDP00005000177	VPS26B	ENSACDP00005000177	ENSACDP00005015705	Vacuolar protein sorting-associated protein 29-like.	Vacuolar protein sorting-associated protein 26B.	0.881
ENSACDP00005000177	VPS29	ENSACDP00005000177	ENSACDP00005011318	Vacuolar protein sorting-associated protein 29-like.	Vacuolar protein sorting-associated protein 29.	0.967
ENSACDP00005000177	VPS35	ENSACDP00005000177	ENSACDP00005007795	Vacuolar protein sorting-associated protein 29-like.	Vacuolar protein sorting-associated protein 35.	0.963
SNX1	ENSACDP00005000177	ENSACDP00005018383	ENSACDP00005000177	Sorting nexin-1/2.	Vacuolar protein sorting-associated protein 29-like.	0.825
SNX1	SNX12	ENSACDP00005018383	ENSACDP00005002164	Sorting nexin-1/2.	Sorting nexin-3/12.	0.690
SNX1	SNX2	ENSACDP00005018383	ENSACDP00005026475	Sorting nexin-1/2.	Sorting nexin 2.	0.953
SNX1	SNX27	ENSACDP00005018383	ENSACDP00005006375	Sorting nexin-1/2.	Sorting nexin-27.	0.882
SNX1	SNX3	ENSACDP00005018383	ENSACDP00005003847	Sorting nexin-1/2.	Sorting nexin-3/12.	0.690
SNX1	TBC1D5	ENSACDP00005018383	ENSACDP00005019033	Sorting nexin-1/2.	TBC1 domain family member 5 isoform X1.	0.784