STRINGSTRING
RPA2 RPA2 POLK POLK HUS1 HUS1 PCNA PCNA CHEK1 CHEK1 Rad50 Rad50 MAD2L2 MAD2L2 MCM3 MCM3 Mcm7 Mcm7 RFC5 RFC5 BRIP1 BRIP1 TDRD3 TDRD3 ORC3 ORC3 TOPBP1 TOPBP1 RAD51D RAD51D GINS1 GINS1 MCMDC2 MCMDC2 DNA2 DNA2 CDC6 CDC6 RECQL5 RECQL5 PRIM2 PRIM2 BLM BLM MSH4 MSH4 ENSFDAP00000003677 ENSFDAP00000003677 WDHD1 WDHD1 BRCA1 BRCA1 MCM5 MCM5 DSCC1 DSCC1 GMNN GMNN RAD52 RAD52 ORC1 ORC1 RECQL4 RECQL4 RHNO1 RHNO1 RAD51 RAD51 MSH6 MSH6 ATAD5 ATAD5 NBN NBN CDT1 CDT1 ATRIP ATRIP ORC6 ORC6 ANKRD31 ANKRD31 MCM10 MCM10 RFC1 RFC1 H920_03785 H920_03785 DBF4 DBF4 RAD51AP1 RAD51AP1 RAD51C RAD51C Msh5 Msh5 TOP3A TOP3A TIMELESS TIMELESS Tm4sf19 Tm4sf19 POLE POLE GINS3 GINS3 CDC7 CDC7 RBBP8 RBBP8 RAD9B RAD9B ORC5 ORC5 ENSFDAP00000010230 ENSFDAP00000010230 POLA1 POLA1 RFC2 RFC2 MCM2 MCM2 RPA3 RPA3 RFC3 RFC3 H920_13460 H920_13460 MCM4 MCM4 CLSPN CLSPN ATR ATR Fen1 Fen1 ATM ATM Pold4 Pold4 RAD51B RAD51B REV1 REV1 PIEZO1 PIEZO1 TP53BP1 TP53BP1 DDX11 DDX11 MLH1 MLH1 BRCA2 BRCA2 H920_01336 H920_01336 GINS2 GINS2 MCM6 MCM6 DMC1 DMC1 SLF1 SLF1 Pms2 Pms2 POLI POLI RFC4 RFC4 XRCC3 XRCC3 Mcm8 Mcm8 ORC4 ORC4 PMS1 PMS1 CHEK2 CHEK2 ENSFDAP00000017292 ENSFDAP00000017292 GINS4 GINS4 BARD1 BARD1 POLE3 POLE3 Prim1 Prim1 FBH1 FBH1 EXD2 EXD2 SASS6 SASS6 POLD1 POLD1 Pold3 Pold3 MCM9 MCM9 WRN WRN ENSFDAP00000020651 ENSFDAP00000020651 LIG1 LIG1 MLH3 MLH3 CDC45 CDC45 POLE2 POLE2 MRE11 MRE11 RPA1 RPA1 RAD1 RAD1 RAD9A RAD9A MEIOB MEIOB MSH2 MSH2 RAD17 RAD17 TOP3B TOP3B ORC2 ORC2 POLD2 POLD2 Pola2 Pola2 REV3L REV3L XRCC2 XRCC2 MCMBP MCMBP
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPA2Replication protein A 32 kDa subunit. (270 aa)
POLKDNA polymerase kappa. (862 aa)
HUS1Checkpoint protein; Belongs to the HUS1 family. (280 aa)
PCNAProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (261 aa)
CHEK1Serine/threonine-protein kinase Chk1; Belongs to the protein kinase superfamily. (476 aa)
Rad50DNA repair protein RAD50. (1312 aa)
MAD2L2Mitotic spindle assembly checkpoint protein MAD2B. (211 aa)
MCM3DNA helicase; Belongs to the MCM family. (817 aa)
Mcm7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (719 aa)
RFC5Replication factor C subunit 5. (338 aa)
BRIP1Fanconi anemia group J protein. (1161 aa)
TDRD3Tudor domain-containing protein 3. (731 aa)
ORC3Origin recognition complex subunit 3. (720 aa)
TOPBP1DNA topoisomerase 2-binding protein 1. (1526 aa)
RAD51DDNA repair protein RAD51 like protein 4. (329 aa)
GINS1DNA replication complex GINS protein PSF1. (196 aa)
MCMDC2Minichromosome maintenance domain containing 2. (681 aa)
DNA2DNA2-like helicase. (1059 aa)
CDC6Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family. (558 aa)
RECQL5ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (967 aa)
PRIM2DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands. (506 aa)
BLMBloom syndrome protein. (1348 aa)
MSH4DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (854 aa)
ENSFDAP00000003677annotation not available (171 aa)
WDHD1WD repeat and HMG-box DNA-binding protein 1. (1126 aa)
BRCA1Breast cancer type 1 susceptibility protein homolog; E3 ubiquitin-protein ligase that specifically mediates the formation of 'Lys-6'-linked polyubiquitin chains and plays a central role in DNA repair by facilitating cellular responses to DNA damage. It is unclear whether it also mediates the formation of other types of polyubiquitin chains. The E3 ubiquitin-protein ligase activity is required for its tumor suppressor function. The BRCA1-BARD1 heterodimer coordinates a diverse range of cellular pathways such as DNA damage repair, ubiquitination and transcriptional regulation to maintain [...] (1737 aa)
MCM5DNA helicase; Belongs to the MCM family. (678 aa)
DSCC1DNA replication and sister chromatid cohesion 1. (332 aa)
GMNNGeminin. (208 aa)
RAD52DNA repair protein RAD52 like protein. (294 aa)
ORC1Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (828 aa)
RECQL4ATP-dependent DNA helicase Q4. (1197 aa)
RHNO1Uncharacterized protein. (235 aa)
RAD51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (339 aa)
MSH6DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1317 aa)
ATAD5ATPase family AAA domain-containing protein 5. (1822 aa)
NBNNibrin; Component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex is involved in double- strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, cell cycle checkpoint control and meiosis. (747 aa)
CDT1DNA replication factor Cdt1. (542 aa)
ATRIPATR-interacting protein. (720 aa)
ORC6Origin recognition complex subunit 6. (252 aa)
ANKRD31Ankyrin repeat domain-containing protein 31. (1857 aa)
MCM10Protein MCM10 like protein. (874 aa)
RFC1Replication factor C subunit 1. (1141 aa)
H920_03785Chromosome transmission fidelity protein 18 like protein. (125 aa)
DBF4Protein DBF4 like protein A. (636 aa)
RAD51AP1RAD51-associated protein 1. (335 aa)
RAD51CDNA repair protein RAD51 like protein 3. (367 aa)
Msh5MutS protein like protein 5. (827 aa)
TOP3ADNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (991 aa)
TIMELESSProtein timeless like protein. (1207 aa)
Tm4sf19Transmembrane 4 L6 family member 19. (181 aa)
POLEDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2286 aa)
GINS3GINS complex subunit 3. (216 aa)
CDC7Cell division cycle 7-related protein kinase. (571 aa)
RBBP8RB binding protein 8, endonuclease. (901 aa)
RAD9BCell cycle checkpoint control protein; Belongs to the rad9 family. (404 aa)
ORC5Origin recognition complex subunit 5. (435 aa)
ENSFDAP00000010230annotation not available (709 aa)
POLA1DNA polymerase. (1462 aa)
RFC2Replication factor C subunit 2. (316 aa)
MCM2DNA helicase; Belongs to the MCM family. (903 aa)
RPA3Replication protein A 14 kDa subunit. (122 aa)
RFC3Replication factor C subunit 3. (356 aa)
H920_13460TIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (74 aa)
MCM4DNA helicase; Belongs to the MCM family. (863 aa)
CLSPNClaspin. (1338 aa)
ATRSerine/threonine-protein kinase ATR; Belongs to the PI3/PI4-kinase family. (2644 aa)
Fen1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
ATMSerine-protein kinase ATM; Serine/threonine protein kinase which activates checkpoint signaling upon double strand breaks (DSBs), apoptosis and genotoxic stresses such as ionizing ultraviolet A light (UVA), thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX at double strand breaks (DSBs), thereby regulating DNA damage response mechanism. Also plays a role in pre-B cell allelic exclusion, a process leading to expression of a single immunoglobulin heavy chain allele to enforce clonality and mo [...] (3061 aa)
Pold4DNA polymerase delta subunit 4. (107 aa)
RAD51BDNA repair protein RAD51 like protein 2. (258 aa)
REV1DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1248 aa)
PIEZO1Protein PIEZO1. (2427 aa)
TP53BP1Tumor suppressor p53-binding protein 1. (1958 aa)
DDX11DEAD/H-box helicase 11. (772 aa)
MLH1DNA mismatch repair protein Mlh1. (767 aa)
BRCA2Breast cancer type 2 susceptibility protein. (3134 aa)
H920_01336DNA mismatch repair protein Msh3. (395 aa)
GINS2DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family. (162 aa)
MCM6DNA helicase; Belongs to the MCM family. (786 aa)
DMC1DNA meiotic recombinase 1. (340 aa)
SLF1Ankyrin repeat domain-containing protein 32. (1057 aa)
Pms2PMS1 homolog 2, mismatch repair system component. (461 aa)
POLIDNA polymerase iota. (698 aa)
RFC4Replication factor C subunit 4. (333 aa)
XRCC3DNA repair protein XRCC3. (338 aa)
Mcm8DNA replication licensing factor MCM8; Belongs to the MCM family. (833 aa)
ORC4Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. (436 aa)
PMS1PMS1 protein like protein 1. (931 aa)
CHEK2Serine/threonine-protein kinase Chk2. (549 aa)
ENSFDAP00000017292annotation not available (27 aa)
GINS4DNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family. (223 aa)
BARD1BRCA1-associated RING domain protein 1. (672 aa)
POLE3DNA polymerase epsilon subunit 3. (147 aa)
Prim1DNA primase; Belongs to the eukaryotic-type primase small subunit family. (419 aa)
FBH1F-box only protein 18. (1042 aa)
EXD2Exonuclease 3'-5' domain-containing protein 2. (617 aa)
SASS6SAS-6 centriolar assembly protein. (657 aa)
POLD1DNA polymerase delta 1, catalytic subunit. (933 aa)
Pold3DNA polymerase delta subunit 3. (465 aa)
MCM9DNA replication licensing factor MCM9; Belongs to the MCM family. (1106 aa)
WRNWerner syndrome ATP-dependent helicase. (1439 aa)
ENSFDAP00000020651annotation not available (191 aa)
LIG1DNA ligase. (916 aa)
MLH3DNA mismatch repair protein Mlh3. (1446 aa)
CDC45Cell division control protein 45 like protein. (566 aa)
POLE2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (527 aa)
MRE11MRE11 homolog, double strand break repair nuclease. (708 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (615 aa)
RAD1Cell cycle checkpoint protein RAD1. (279 aa)
RAD9ACell cycle checkpoint control protein; Belongs to the rad9 family. (411 aa)
MEIOBCDC24_OB3 domain-containing protein. (471 aa)
MSH2DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (934 aa)
RAD17Cell cycle checkpoint protein RAD17. (714 aa)
TOP3BDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (862 aa)
ORC2Origin recognition complex subunit 2. (599 aa)
POLD2DNA polymerase delta subunit 2. (469 aa)
Pola2DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (598 aa)
REV3LDNA polymerase zeta catalytic subunit. (3013 aa)
XRCC2Actin related protein 3B. (231 aa)
MCMBPMini-chromosome maintenance complex-binding protein. (622 aa)
Your Current Organism:
Fukomys damarensis
NCBI taxonomy Id: 885580
Other names: Coetomys damarensis, Cryptomys damarensis, Damara mole rat, Damara mole-rat, F. damarensis
Server load: low (26%) [HD]