STRINGSTRING
CTR9 CTR9 ENSFDAP00000000117 ENSFDAP00000000117 Polr2j Polr2j MNAT1 MNAT1 GTF2H3 GTF2H3 ENSFDAP00000000529 ENSFDAP00000000529 LOC104871412 LOC104871412 ENSFDAP00000000779 ENSFDAP00000000779 RTF1 RTF1 POLR2I POLR2I Tcea3 Tcea3 ELL ELL LOC104858675 LOC104858675 NELFE NELFE HMGB2 HMGB2 BRF2 BRF2 ERCC3 ERCC3 TJAP1 TJAP1 TCEA2 TCEA2 GTF3C4 GTF3C4 Polr3g Polr3g H920_19646 H920_19646 Taf7 Taf7 GTF3C5 GTF3C5 BDP1 BDP1 MAF1 MAF1 GTF2B GTF2B POLR3E POLR3E CTDP1 CTDP1 CCNT1 CCNT1 GTF2H5 GTF2H5 POLR1A POLR1A ZNF512B ZNF512B EAF2 EAF2 ENSFDAP00000004957 ENSFDAP00000004957 ELL3 ELL3 TAF3 TAF3 CRCP CRCP TAF6 TAF6 POLR2E POLR2E TCEANC2 TCEANC2 TBPL1 TBPL1 CCNK CCNK Fbxw12 Fbxw12 TAF12 TAF12 TCEANC TCEANC SUPT5H SUPT5H CDC73 CDC73 ENSFDAP00000007302 ENSFDAP00000007302 GTF2F1 GTF2F1 EAF1 EAF1 SUPT6H SUPT6H TBPL2 TBPL2 TBP TBP Polr3gl Polr3gl CDK20 CDK20 GTF2A1L GTF2A1L SRBD1 SRBD1 SUPT4H1 SUPT4H1 GTF3A GTF3A POLR1E POLR1E NELFB NELFB DUSP11 DUSP11 TAF4 TAF4 TOX TOX GTF3C3 GTF3C3 TWISTNB TWISTNB ELL2 ELL2 ERCC2 ERCC2 TAF8 TAF8 TAF2 TAF2 TAF11 TAF11 GTF2F2 GTF2F2 BEGAIN BEGAIN GTF2E1 GTF2E1 RTL1 RTL1 ENSFDAP00000011192 ENSFDAP00000011192 SIDT1 SIDT1 AFF1 AFF1 RRN3 RRN3 MLLT3 MLLT3 NELFA NELFA GTF2H4 GTF2H4 GTF3C1 GTF3C1 Sidt2 Sidt2 TAF9B TAF9B CDK9 CDK9 Ocel1 Ocel1 CCNT2 CCNT2 POLR2K POLR2K ZNF512 ZNF512 Rtel1 Rtel1 GTF2H1 GTF2H1 POLR3K POLR3K SSRP1 SSRP1 H920_05253 H920_05253 SHROOM3 SHROOM3 POLR3F POLR3F CDK7 CDK7 ZNRD1 ZNRD1 GTF2A1 GTF2A1 ENSFDAP00000015575 ENSFDAP00000015575 TAF10 TAF10 HDGFL2 HDGFL2 TAF4B TAF4B POLR1D POLR1D TAF7L TAF7L AFF4 AFF4 Cdk13 Cdk13 Hmgb3 Hmgb3 POLR2B POLR2B Taf1 Taf1 Hmgb1 Hmgb1 POLR3D POLR3D POLR2F POLR2F PAF1 PAF1 IWS1 IWS1 CDK12 CDK12 H920_06373 H920_06373 GTF2E2 GTF2E2 TAF13 TAF13 POLR3H POLR3H CINP CINP POLR2H POLR2H RPAP2 RPAP2 TOX3 TOX3 H920_16633 H920_16633 POLR3B POLR3B POLR2C POLR2C POLR1C POLR1C ENSFDAP00000020588 ENSFDAP00000020588 Polr2a Polr2a MLLT1 MLLT1 SUPT16H SUPT16H TAF5 TAF5 CCNQ CCNQ ELOA ELOA POLR3A POLR3A CCNH CCNH TCEA1 TCEA1 BRF1 BRF1 GTF2A2 GTF2A2 HDGF HDGF ELOF1 ELOF1 POLR2D POLR2D GTF3C2 GTF3C2 POLR1B POLR1B POLR2G POLR2G LOC104865194 LOC104865194 LEO1 LEO1 POLR3C POLR3C EEPD1 EEPD1 DLK1 DLK1 POLR2L POLR2L
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CTR9RNA polymerase-associated protein CTR9 like protein. (1175 aa)
ENSFDAP00000000117annotation not available (223 aa)
Polr2jDNA-directed RNA polymerase II subunit RPB11-a. (117 aa)
MNAT1CDK-activating kinase assembly factor MAT1. (309 aa)
GTF2H3General transcription factor IIH subunit 3. (305 aa)
ENSFDAP00000000529annotation not available (261 aa)
LOC104871412General transcription factor IIH subunit 2. (395 aa)
ENSFDAP00000000779annotation not available (698 aa)
RTF1RNA polymerase-associated protein RTF1 like protein. (429 aa)
POLR2IDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
Tcea3Zinc finger protein 436. (421 aa)
ELLElongation factor for RNA polymerase II. (533 aa)
LOC104858675Uroplakin-3b-like protein. (252 aa)
NELFENegative elongation factor E. (359 aa)
HMGB2High mobility group box 2. (160 aa)
BRF2Transcription factor IIIB 50 kDa subunit. (419 aa)
ERCC3TFIIH basal transcription factor complex helicase XPB subunit. (781 aa)
TJAP1Tight junction-associated protein 1. (543 aa)
TCEA2Transcription elongation factor A protein 2. (278 aa)
GTF3C4General transcription factor IIIC subunit 4. (758 aa)
Polr3gDNA-directed RNA polymerase III subunit RPC7. (222 aa)
H920_19646DNA-directed RNA polymerase I subunit RPA34. (375 aa)
Taf7Transcription initiation factor TFIID subunit 7. (341 aa)
GTF3C5General transcription factor 3C polypeptide 5. (515 aa)
BDP1Transcription factor TFIIIB component B'' like protein. (2392 aa)
MAF1WD repeat-containing protein KIAA1875. (258 aa)
GTF2BTranscription initiation factor IIB. (317 aa)
POLR3EDNA-directed RNA polymerase III subunit RPC5. (693 aa)
CTDP1RNA polymerase II subunit A C-terminal domain phosphatase. (701 aa)
CCNT1Cyclin-T1; Belongs to the cyclin family. (727 aa)
GTF2H5General transcription factor IIH subunit 5. (71 aa)
POLR1ADNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1713 aa)
ZNF512BZinc finger protein 512B. (887 aa)
EAF2ELL-associated factor 2. (261 aa)
ENSFDAP00000004957annotation not available (98 aa)
ELL3RNA polymerase II elongation factor ELL3. (340 aa)
TAF3Transcription initiation factor TFIID subunit 3. (770 aa)
CRCPCGRP receptor component. (149 aa)
TAF6Transcription initiation factor TFIID subunit 6. (676 aa)
POLR2EDNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
TCEANC2Transcription elongation factor A N-terminal and central domain-containing protein 2. (208 aa)
TBPL1TATA-box binding protein like 1. (186 aa)
CCNKCyclin K. (391 aa)
Fbxw12F-box/WD repeat-containing protein 12. (434 aa)
TAF12Transcription initiation factor TFIID subunit 12. (213 aa)
TCEANCTranscription elongation factor A N-terminal and central domain-containing protein. (295 aa)
SUPT5HTranscription elongation factor SPT5. (1087 aa)
CDC73Parafibromin. (531 aa)
ENSFDAP00000007302annotation not available (502 aa)
GTF2F1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (512 aa)
EAF1ELL-associated factor 1. (270 aa)
SUPT6HTranscription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1726 aa)
TBPL2TATA box-binding protein-like protein 2. (329 aa)
TBPTATA-box-binding protein. (321 aa)
Polr3glRNA polymerase III subunit G like. (218 aa)
CDK20Cyclin-dependent kinase 20; Belongs to the protein kinase superfamily. (346 aa)
GTF2A1LTFIIA-alpha and beta-like factor. (475 aa)
SRBD1S1 RNA-binding domain-containing protein 1. (955 aa)
SUPT4H1SPT4 homolog, DSIF elongation factor subunit. (117 aa)
GTF3ATranscription factor IIIA. (324 aa)
POLR1EDNA-directed RNA polymerase I subunit RPA49. (418 aa)
NELFBNegative elongation factor complex member B. (597 aa)
DUSP11RNA/RNP complex-1-interacting phosphatase. (312 aa)
TAF4TATA-box binding protein associated factor 4. (620 aa)
TOXThymocyte selection-associated high mobility group box protein TOX. (518 aa)
GTF3C3General transcription factor 3C polypeptide 3. (885 aa)
TWISTNBDNA-directed RNA polymerase I subunit RPA43. (338 aa)
ELL2RNA polymerase II elongation factor ELL2. (592 aa)
ERCC2TFIIH basal transcription factor complex helicase XPD subunit. (760 aa)
TAF8Transcription initiation factor TFIID subunit 8. (306 aa)
TAF2Transcription initiation factor TFIID subunit 2. (1214 aa)
TAF11Transcription initiation factor TFIID subunit 11. (211 aa)
GTF2F2Short-chain dehydrogenase/reductase family 42E member 1. (249 aa)
BEGAINBrain enriched guanylate kinase associated. (510 aa)
GTF2E1General transcription factor IIE subunit 1. (441 aa)
RTL1Retrotransposon-like protein 1. (1374 aa)
ENSFDAP00000011192annotation not available (51 aa)
SIDT1SID1 transmembrane family member 1. (800 aa)
AFF1AF4/FMR2 family member 1. (1194 aa)
RRN3RNA polymerase I-specific transcription initiation factor RRN3. (657 aa)
MLLT3Protein AF-9. (568 aa)
NELFANegative elongation factor A. (532 aa)
GTF2H4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (406 aa)
GTF3C1General transcription factor 3C polypeptide 1. (2064 aa)
Sidt2SID1 transmembrane family member 2. (852 aa)
TAF9BTranscription initiation factor TFIID subunit 9B. (260 aa)
CDK9Cyclin dependent kinase 9. (378 aa)
Ocel1Occludin/ELL domain-containing protein 1. (175 aa)
CCNT2Cyclin-T2; Belongs to the cyclin family. (733 aa)
POLR2KDNA-directed RNA polymerases I, II, and III subunit RPABC4. (58 aa)
ZNF512Zinc finger protein 512. (562 aa)
Rtel1Regulator of telomere elongation helicase 1; ATP-dependent DNA helicase implicated in telomere-length regulation, DNA repair and the maintenance of genomic stability. Acts as an anti-recombinase to counteract toxic recombination and limit crossover during meiosis. Regulates meiotic recombination and crossover homeostasis by physically dissociating strand invasion events and thereby promotes noncrossover repair by meiotic synthesis dependent strand annealing (SDSA) as well as disassembly of D loop recombination intermediates. Also disassembles T loops and prevents telomere fragility by [...] (1419 aa)
GTF2H1General transcription factor IIH subunit 1. (548 aa)
POLR3KDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (108 aa)
SSRP1FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (710 aa)
H920_05253Transcription elongation factor A protein 3. (345 aa)
SHROOM3Shroom family member 3. (1526 aa)
POLR3FDNA-directed RNA polymerase III subunit RPC6. (316 aa)
CDK7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (346 aa)
ZNRD1Zinc ribbon domain containing 1. (100 aa)
GTF2A1General transcription factor IIA subunit 1. (375 aa)
ENSFDAP00000015575annotation not available (193 aa)
TAF10Transcription initiation factor TFIID subunit 10. (175 aa)
HDGFL2Hepatoma-derived growth factor-related protein 2. (556 aa)
TAF4BTranscription initiation factor TFIID subunit 4B. (730 aa)
POLR1DDNA-directed RNA polymerases I and III subunit RPAC2. (133 aa)
TAF7LTATA-box binding protein associated factor 7 like. (371 aa)
AFF4AF4/FMR2 family member 4. (1171 aa)
Cdk13Cyclin-dependent kinase 13. (402 aa)
Hmgb3High mobility group protein B3. (198 aa)
POLR2BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1178 aa)
Taf1Transcription initiation factor TFIID subunit 1. (1856 aa)
Hmgb1High mobility group protein B1. (215 aa)
POLR3DDNA-directed RNA polymerase III subunit RPC4. (398 aa)
POLR2FDNA-directed RNA polymerases I, II, and III subunit RPABC2. (127 aa)
PAF1RNA polymerase II-associated factor 1 like protein. (534 aa)
IWS1Protein IWS1 like protein. (830 aa)
CDK12Cyclin-dependent kinase 12. (1491 aa)
H920_06373High mobility group-T protein. (197 aa)
GTF2E2Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (293 aa)
TAF13Transcription initiation factor TFIID subunit 13. (124 aa)
POLR3HRNA polymerase III subunit H. (204 aa)
CINPCyclin-dependent kinase 2-interacting protein. (212 aa)
POLR2HRNA polymerase II subunit H. (150 aa)
RPAP2RNA polymerase II associated protein 2. (606 aa)
TOX3TOX high mobility group box family member 3. (570 aa)
H920_16633High mobility group protein B1. (166 aa)
POLR3BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1133 aa)
POLR2CDNA-directed RNA polymerase II subunit RPB3. (266 aa)
POLR1CDNA-directed RNA polymerases I and III subunit RPAC1. (346 aa)
ENSFDAP00000020588annotation not available (340 aa)
Polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1970 aa)
MLLT1Protein ENL. (552 aa)
SUPT16HFACT complex subunit SPT16. (1047 aa)
TAF5Transcription initiation factor TFIID subunit 5. (646 aa)
CCNQCyclin-related protein FAM58A. (211 aa)
ELOATranscription elongation factor B polypeptide 3. (767 aa)
POLR3ADNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1390 aa)
CCNHCyclin-H; Belongs to the cyclin family. (323 aa)
TCEA1Transcription elongation factor A1. (280 aa)
BRF1Transcription factor IIIB 90 kDa subunit. (657 aa)
GTF2A2Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
HDGFHeparin binding growth factor. (207 aa)
ELOF1EGF-like module-containing mucin-like hormone receptor-like 4; Belongs to the G-protein coupled receptor 2 family. (83 aa)
POLR2DDNA-directed RNA polymerase II subunit RPB4. (142 aa)
GTF3C2General transcription factor 3C polypeptide 2; Belongs to the eIF-2B alpha/beta/delta subunits family. (939 aa)
POLR1BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1135 aa)
POLR2GRNA polymerase II subunit G. (172 aa)
LOC104865194Keratin, type II cytoskeletal 6A; Belongs to the intermediate filament family. (568 aa)
LEO1RNA polymerase-associated protein LEO1. (634 aa)
POLR3CRNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (534 aa)
EEPD1Endonuclease/exonuclease/phosphatase family domain-containing protein 1. (569 aa)
DLK1Delta like non-canonical Notch ligand 1. (356 aa)
POLR2LDNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
Your Current Organism:
Fukomys damarensis
NCBI taxonomy Id: 885580
Other names: Coetomys damarensis, Cryptomys damarensis, Damara mole rat, Damara mole-rat, F. damarensis
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