STRINGSTRING
CTR9 CTR9 Polr2j Polr2j ENSFDAP00000000779 ENSFDAP00000000779 RTF1 RTF1 POLR2I POLR2I Tcea3 Tcea3 ELL ELL LOC104858675 LOC104858675 TCEA2 TCEA2 CTDP1 CTDP1 CCNT1 CCNT1 EAF2 EAF2 ELL3 ELL3 POLR2E POLR2E CCNK CCNK TCEANC TCEANC SUPT5H SUPT5H CDC73 CDC73 EAF1 EAF1 SUPT6H SUPT6H SRBD1 SRBD1 SUPT4H1 SUPT4H1 DUSP11 DUSP11 ELL2 ELL2 SIDT1 SIDT1 AFF1 AFF1 MLLT3 MLLT3 Sidt2 Sidt2 CDK9 CDK9 CCNT2 CCNT2 POLR2K POLR2K SSRP1 SSRP1 AFF4 AFF4 POLR2B POLR2B PAF1 PAF1 IWS1 IWS1 CDK12 CDK12 CINP CINP POLR2H POLR2H RPAP2 RPAP2 POLR2C POLR2C ENSFDAP00000020588 ENSFDAP00000020588 Polr2a Polr2a MLLT1 MLLT1 SUPT16H SUPT16H ELOA ELOA TCEA1 TCEA1 ELOF1 ELOF1 POLR2D POLR2D POLR2G POLR2G LEO1 LEO1 EEPD1 EEPD1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CTR9RNA polymerase-associated protein CTR9 like protein. (1175 aa)
Polr2jDNA-directed RNA polymerase II subunit RPB11-a. (117 aa)
ENSFDAP00000000779annotation not available (698 aa)
RTF1RNA polymerase-associated protein RTF1 like protein. (429 aa)
POLR2IDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
Tcea3Zinc finger protein 436. (421 aa)
ELLElongation factor for RNA polymerase II. (533 aa)
LOC104858675Uroplakin-3b-like protein. (252 aa)
TCEA2Transcription elongation factor A protein 2. (278 aa)
CTDP1RNA polymerase II subunit A C-terminal domain phosphatase. (701 aa)
CCNT1Cyclin-T1; Belongs to the cyclin family. (727 aa)
EAF2ELL-associated factor 2. (261 aa)
ELL3RNA polymerase II elongation factor ELL3. (340 aa)
POLR2EDNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
CCNKCyclin K. (391 aa)
TCEANCTranscription elongation factor A N-terminal and central domain-containing protein. (295 aa)
SUPT5HTranscription elongation factor SPT5. (1087 aa)
CDC73Parafibromin. (531 aa)
EAF1ELL-associated factor 1. (270 aa)
SUPT6HTranscription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1726 aa)
SRBD1S1 RNA-binding domain-containing protein 1. (955 aa)
SUPT4H1SPT4 homolog, DSIF elongation factor subunit. (117 aa)
DUSP11RNA/RNP complex-1-interacting phosphatase. (312 aa)
ELL2RNA polymerase II elongation factor ELL2. (592 aa)
SIDT1SID1 transmembrane family member 1. (800 aa)
AFF1AF4/FMR2 family member 1. (1194 aa)
MLLT3Protein AF-9. (568 aa)
Sidt2SID1 transmembrane family member 2. (852 aa)
CDK9Cyclin dependent kinase 9. (378 aa)
CCNT2Cyclin-T2; Belongs to the cyclin family. (733 aa)
POLR2KDNA-directed RNA polymerases I, II, and III subunit RPABC4. (58 aa)
SSRP1FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (710 aa)
AFF4AF4/FMR2 family member 4. (1171 aa)
POLR2BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1178 aa)
PAF1RNA polymerase II-associated factor 1 like protein. (534 aa)
IWS1Protein IWS1 like protein. (830 aa)
CDK12Cyclin-dependent kinase 12. (1491 aa)
CINPCyclin-dependent kinase 2-interacting protein. (212 aa)
POLR2HRNA polymerase II subunit H. (150 aa)
RPAP2RNA polymerase II associated protein 2. (606 aa)
POLR2CDNA-directed RNA polymerase II subunit RPB3. (266 aa)
ENSFDAP00000020588annotation not available (340 aa)
Polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1970 aa)
MLLT1Protein ENL. (552 aa)
SUPT16HFACT complex subunit SPT16. (1047 aa)
ELOATranscription elongation factor B polypeptide 3. (767 aa)
TCEA1Transcription elongation factor A1. (280 aa)
ELOF1EGF-like module-containing mucin-like hormone receptor-like 4; Belongs to the G-protein coupled receptor 2 family. (83 aa)
POLR2DDNA-directed RNA polymerase II subunit RPB4. (142 aa)
POLR2GRNA polymerase II subunit G. (172 aa)
LEO1RNA polymerase-associated protein LEO1. (634 aa)
EEPD1Endonuclease/exonuclease/phosphatase family domain-containing protein 1. (569 aa)
Your Current Organism:
Fukomys damarensis
NCBI taxonomy Id: 885580
Other names: Coetomys damarensis, Cryptomys damarensis, Damara mole rat, Damara mole-rat, F. damarensis
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