13 items (Fukomys damarensis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSFDAP00000006648	annotation not available (129 aa)
	ENSFDAP00000017776	annotation not available (72 aa)
	OTUB1	Ubiquitin thioesterase. (271 aa)
	PARK7	Protein DJ-1. (189 aa)
	CDK9	Cyclin dependent kinase 9. (378 aa)
	H920_07462	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family. (142 aa)
	RNF20	E3 ubiquitin protein ligase; Belongs to the BRE1 family. (975 aa)
	TRIP12	Putative E3 ubiquitin-protein ligase TRIP12. (2026 aa)
	OTUB2	Ubiquitin thioesterase OTUB2. (234 aa)
	KDM1A	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family. (750 aa)
	RNF40	E3 ubiquitin protein ligase; Belongs to the BRE1 family. (1001 aa)
	UBR5	E3 ubiquitin-protein ligase UBR5. (2791 aa)
	CTR9	RNA polymerase-associated protein CTR9 like protein. (1175 aa)

Your Current Organism:

Fukomys damarensis

NCBI taxonomy Id: 885580
Other names: Coetomys damarensis, Cryptomys damarensis, Damara mole rat, Damara mole-rat, F. damarensis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDK9	CTR9	ENSFDAP00000012951	ENSFDAP00000000056	Cyclin dependent kinase 9.	RNA polymerase-associated protein CTR9 like protein.	0.549
CTR9	CDK9	ENSFDAP00000000056	ENSFDAP00000012951	RNA polymerase-associated protein CTR9 like protein.	Cyclin dependent kinase 9.	0.549
CTR9	PARK7	ENSFDAP00000000056	ENSFDAP00000013743	RNA polymerase-associated protein CTR9 like protein.	Protein DJ-1.	0.404
CTR9	RNF20	ENSFDAP00000000056	ENSFDAP00000008827	RNA polymerase-associated protein CTR9 like protein.	E3 ubiquitin protein ligase; Belongs to the BRE1 family.	0.848
CTR9	RNF40	ENSFDAP00000000056	ENSFDAP00000006235	RNA polymerase-associated protein CTR9 like protein.	E3 ubiquitin protein ligase; Belongs to the BRE1 family.	0.846
ENSFDAP00000006648	OTUB1	ENSFDAP00000006648	ENSFDAP00000017183	annotation not available	Ubiquitin thioesterase.	0.958
ENSFDAP00000006648	OTUB2	ENSFDAP00000006648	ENSFDAP00000008171	annotation not available	Ubiquitin thioesterase OTUB2.	0.878
ENSFDAP00000006648	PARK7	ENSFDAP00000006648	ENSFDAP00000013743	annotation not available	Protein DJ-1.	0.639
ENSFDAP00000006648	RNF20	ENSFDAP00000006648	ENSFDAP00000008827	annotation not available	E3 ubiquitin protein ligase; Belongs to the BRE1 family.	0.603
ENSFDAP00000006648	RNF40	ENSFDAP00000006648	ENSFDAP00000006235	annotation not available	E3 ubiquitin protein ligase; Belongs to the BRE1 family.	0.603
ENSFDAP00000006648	TRIP12	ENSFDAP00000006648	ENSFDAP00000008429	annotation not available	Putative E3 ubiquitin-protein ligase TRIP12.	0.963
ENSFDAP00000017776	OTUB1	ENSFDAP00000017776	ENSFDAP00000017183	annotation not available	Ubiquitin thioesterase.	0.958
ENSFDAP00000017776	OTUB2	ENSFDAP00000017776	ENSFDAP00000008171	annotation not available	Ubiquitin thioesterase OTUB2.	0.878
ENSFDAP00000017776	PARK7	ENSFDAP00000017776	ENSFDAP00000013743	annotation not available	Protein DJ-1.	0.639
ENSFDAP00000017776	RNF20	ENSFDAP00000017776	ENSFDAP00000008827	annotation not available	E3 ubiquitin protein ligase; Belongs to the BRE1 family.	0.603
ENSFDAP00000017776	RNF40	ENSFDAP00000017776	ENSFDAP00000006235	annotation not available	E3 ubiquitin protein ligase; Belongs to the BRE1 family.	0.603
ENSFDAP00000017776	TRIP12	ENSFDAP00000017776	ENSFDAP00000008429	annotation not available	Putative E3 ubiquitin-protein ligase TRIP12.	0.963
H920_07462	OTUB1	ENSFDAP00000010112	ENSFDAP00000017183	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin thioesterase.	0.958
H920_07462	OTUB2	ENSFDAP00000010112	ENSFDAP00000008171	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin thioesterase OTUB2.	0.878
H920_07462	PARK7	ENSFDAP00000010112	ENSFDAP00000013743	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	Protein DJ-1.	0.639