14 items (Fukomys damarensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GDNF	Glial cell line-derived neurotrophic factor. (240 aa)
	DRD2	D(2) dopamine receptor; Belongs to the G-protein coupled receptor 1 family. (443 aa)
	TOR1A	Uncharacterized protein. (272 aa)
	ARL6IP5	PRA1 family protein. (188 aa)
	GFAP	Glial fibrillary acidic protein; Belongs to the intermediate filament family. (462 aa)
	SLC17A8	Vesicular glutamate transporter 3. (589 aa)
	DRD3	D(3) dopamine receptor; Belongs to the G-protein coupled receptor 1 family. (447 aa)
	PER2	Period circadian protein like protein 2. (1226 aa)
	Itgb3	Integrin beta; Belongs to the integrin beta chain family. (761 aa)
	FLOT1	Flotillin 1. (380 aa)
	ITGB1	Integrin beta; Belongs to the integrin beta chain family. (803 aa)
	RAB3B	Ras-related protein Rab-3B. (219 aa)
	SLC18A1	Chromaffin granule amine transporter. (525 aa)
	Nat8l	N-acetyltransferase 8 like. (134 aa)

Your Current Organism:

Fukomys damarensis

NCBI taxonomy Id: 885580
Other names: Coetomys damarensis, Cryptomys damarensis, Damara mole rat, Damara mole-rat, F. damarensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DRD2	DRD3	ENSFDAP00000012245	ENSFDAP00000014660	D(2) dopamine receptor; Belongs to the G-protein coupled receptor 1 family.	D(3) dopamine receptor; Belongs to the G-protein coupled receptor 1 family.	0.851
DRD3	DRD2	ENSFDAP00000014660	ENSFDAP00000012245	D(3) dopamine receptor; Belongs to the G-protein coupled receptor 1 family.	D(2) dopamine receptor; Belongs to the G-protein coupled receptor 1 family.	0.851
GDNF	GFAP	ENSFDAP00000008152	ENSFDAP00000013653	Glial cell line-derived neurotrophic factor.	Glial fibrillary acidic protein; Belongs to the intermediate filament family.	0.408
GFAP	GDNF	ENSFDAP00000013653	ENSFDAP00000008152	Glial fibrillary acidic protein; Belongs to the intermediate filament family.	Glial cell line-derived neurotrophic factor.	0.408
ITGB1	Itgb3	ENSFDAP00000022103	ENSFDAP00000016006	Integrin beta; Belongs to the integrin beta chain family.	Integrin beta; Belongs to the integrin beta chain family.	0.907
Itgb3	ITGB1	ENSFDAP00000016006	ENSFDAP00000022103	Integrin beta; Belongs to the integrin beta chain family.	Integrin beta; Belongs to the integrin beta chain family.	0.907
RAB3B	SLC17A8	ENSFDAP00000001481	ENSFDAP00000013996	Ras-related protein Rab-3B.	Vesicular glutamate transporter 3.	0.521
RAB3B	SLC18A1	ENSFDAP00000001481	ENSFDAP00000004854	Ras-related protein Rab-3B.	Chromaffin granule amine transporter.	0.585
SLC17A8	RAB3B	ENSFDAP00000013996	ENSFDAP00000001481	Vesicular glutamate transporter 3.	Ras-related protein Rab-3B.	0.521
SLC17A8	SLC18A1	ENSFDAP00000013996	ENSFDAP00000004854	Vesicular glutamate transporter 3.	Chromaffin granule amine transporter.	0.835
SLC18A1	RAB3B	ENSFDAP00000004854	ENSFDAP00000001481	Chromaffin granule amine transporter.	Ras-related protein Rab-3B.	0.585
SLC18A1	SLC17A8	ENSFDAP00000004854	ENSFDAP00000013996	Chromaffin granule amine transporter.	Vesicular glutamate transporter 3.	0.835