16 items (Fukomys damarensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NAA30	N-alpha-acetyltransferase 30, NatC catalytic subunit. (204 aa)
	LOC104852098	Putative N-acetyltransferase 8B. (229 aa)
	LOC104852101	Putative N-acetyltransferase 8B. (227 aa)
	NAA40	N-alpha-acetyltransferase 40, NatD catalytic subunit. (238 aa)
	ELP3	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. (547 aa)
	NAT10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1025 aa)
	NAA20	N-alpha-acetyltransferase 20, NatB catalytic subunit. (178 aa)
	NAT9	N-acetyltransferase 9. (206 aa)
	LOC104852100	Putative N-acetyltransferase CML2. (227 aa)
	NAA10	N-alpha-acetyltransferase 10, NatA catalytic subunit. (195 aa)
	Naa50	N-alpha-acetyltransferase 50, NatE catalytic subunit. (169 aa)
	KAT2B	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily. (731 aa)
	HYAL2	Hyaluronidase. (471 aa)
	NAA11	N-alpha-acetyltransferase 11, NatA catalytic subunit. (219 aa)
	H920_16039	N-alpha-acetyltransferase 50, NatE catalytic subunit. (166 aa)
	FXR2	Fragile X mental retardation syndrome-related protein 2. (668 aa)

Your Current Organism:

Fukomys damarensis

NCBI taxonomy Id: 885580
Other names: Coetomys damarensis, Cryptomys damarensis, Damara mole rat, Damara mole-rat, F. damarensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELP3	KAT2B	ENSFDAP00000000867	ENSFDAP00000009841	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.743
H920_16039	KAT2B	ENSFDAP00000005980	ENSFDAP00000009841	N-alpha-acetyltransferase 50, NatE catalytic subunit.	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.619
H920_16039	NAA10	ENSFDAP00000005980	ENSFDAP00000018620	N-alpha-acetyltransferase 50, NatE catalytic subunit.	N-alpha-acetyltransferase 10, NatA catalytic subunit.	0.949
H920_16039	NAA11	ENSFDAP00000005980	ENSFDAP00000007242	N-alpha-acetyltransferase 50, NatE catalytic subunit.	N-alpha-acetyltransferase 11, NatA catalytic subunit.	0.928
H920_16039	NAA20	ENSFDAP00000005980	ENSFDAP00000021912	N-alpha-acetyltransferase 50, NatE catalytic subunit.	N-alpha-acetyltransferase 20, NatB catalytic subunit.	0.544
H920_16039	NAA30	ENSFDAP00000005980	ENSFDAP00000004825	N-alpha-acetyltransferase 50, NatE catalytic subunit.	N-alpha-acetyltransferase 30, NatC catalytic subunit.	0.530
H920_16039	NAA40	ENSFDAP00000005980	ENSFDAP00000001168	N-alpha-acetyltransferase 50, NatE catalytic subunit.	N-alpha-acetyltransferase 40, NatD catalytic subunit.	0.537
KAT2B	ELP3	ENSFDAP00000009841	ENSFDAP00000000867	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.743
KAT2B	H920_16039	ENSFDAP00000009841	ENSFDAP00000005980	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	N-alpha-acetyltransferase 50, NatE catalytic subunit.	0.619
KAT2B	NAT10	ENSFDAP00000009841	ENSFDAP00000000194	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.505
KAT2B	Naa50	ENSFDAP00000009841	ENSFDAP00000014699	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	N-alpha-acetyltransferase 50, NatE catalytic subunit.	0.619
NAA10	H920_16039	ENSFDAP00000018620	ENSFDAP00000005980	N-alpha-acetyltransferase 10, NatA catalytic subunit.	N-alpha-acetyltransferase 50, NatE catalytic subunit.	0.949
NAA10	NAA30	ENSFDAP00000018620	ENSFDAP00000004825	N-alpha-acetyltransferase 10, NatA catalytic subunit.	N-alpha-acetyltransferase 30, NatC catalytic subunit.	0.539
NAA10	NAA40	ENSFDAP00000018620	ENSFDAP00000001168	N-alpha-acetyltransferase 10, NatA catalytic subunit.	N-alpha-acetyltransferase 40, NatD catalytic subunit.	0.471
NAA10	Naa50	ENSFDAP00000018620	ENSFDAP00000014699	N-alpha-acetyltransferase 10, NatA catalytic subunit.	N-alpha-acetyltransferase 50, NatE catalytic subunit.	0.949
NAA11	H920_16039	ENSFDAP00000007242	ENSFDAP00000005980	N-alpha-acetyltransferase 11, NatA catalytic subunit.	N-alpha-acetyltransferase 50, NatE catalytic subunit.	0.928
NAA11	NAA30	ENSFDAP00000007242	ENSFDAP00000004825	N-alpha-acetyltransferase 11, NatA catalytic subunit.	N-alpha-acetyltransferase 30, NatC catalytic subunit.	0.539
NAA11	NAA40	ENSFDAP00000007242	ENSFDAP00000001168	N-alpha-acetyltransferase 11, NatA catalytic subunit.	N-alpha-acetyltransferase 40, NatD catalytic subunit.	0.471
NAA11	Naa50	ENSFDAP00000007242	ENSFDAP00000014699	N-alpha-acetyltransferase 11, NatA catalytic subunit.	N-alpha-acetyltransferase 50, NatE catalytic subunit.	0.928
NAA20	H920_16039	ENSFDAP00000021912	ENSFDAP00000005980	N-alpha-acetyltransferase 20, NatB catalytic subunit.	N-alpha-acetyltransferase 50, NatE catalytic subunit.	0.544