(17 nodes) Anaphase-promoting complex subunit 4, WD40 domain network (Fukomys damarensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	WDR47	WD repeat-containing protein 47. (919 aa)
	AAMP	Angio-associated migratory cell protein. (436 aa)
	WDHD1	WD repeat and HMG-box DNA-binding protein 1. (1126 aa)
	FZR1	Fizzy-related protein like protein. (493 aa)
	WDR3	WD repeat-containing protein 3. (943 aa)
	CDC20B	Cell division cycle protein 20 like protein B. (500 aa)
	EML5	Echinoderm microtubule-associated protein-like 5. (1901 aa)
	WDR35	WD repeat-containing protein 35. (1173 aa)
	IFT140	Intraflagellar transport protein 140 like protein. (1456 aa)
	ANAPC4	Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family. (808 aa)
	GEMIN5	Gem-associated protein 5. (1507 aa)
	WDR62	WD repeat-containing protein 62. (1016 aa)
	CDC20	Cell division cycle protein 20 like protein. (509 aa)
	COPA	Coatomer subunit alpha; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. (1233 aa)
	EML6	Echinoderm microtubule-associated protein-like 6. (1939 aa)
	THOC3	THO complex subunit 3. (351 aa)
	WDR55	WD repeat-containing protein 55; Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Belongs to the WD repeat WDR55 family. (380 aa)

Your Current Organism:

Fukomys damarensis

NCBI taxonomy Id: 885580
Other names: Coetomys damarensis, Cryptomys damarensis, Damara mole rat, Damara mole-rat, F. damarensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AAMP	WDR3	ENSFDAP00000004424	ENSFDAP00000007890	Angio-associated migratory cell protein.	WD repeat-containing protein 3.	0.463
ANAPC4	CDC20	ENSFDAP00000013764	ENSFDAP00000019059	Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.	Cell division cycle protein 20 like protein.	0.985
ANAPC4	CDC20B	ENSFDAP00000013764	ENSFDAP00000008502	Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.	Cell division cycle protein 20 like protein B.	0.977
ANAPC4	EML5	ENSFDAP00000013764	ENSFDAP00000010008	Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.	Echinoderm microtubule-associated protein-like 5.	0.729
ANAPC4	EML6	ENSFDAP00000013764	ENSFDAP00000005951	Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.	Echinoderm microtubule-associated protein-like 6.	0.729
ANAPC4	FZR1	ENSFDAP00000013764	ENSFDAP00000003182	Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.	Fizzy-related protein like protein.	0.995
CDC20	ANAPC4	ENSFDAP00000019059	ENSFDAP00000013764	Cell division cycle protein 20 like protein.	Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.	0.985
CDC20	FZR1	ENSFDAP00000019059	ENSFDAP00000003182	Cell division cycle protein 20 like protein.	Fizzy-related protein like protein.	0.828
CDC20	IFT140	ENSFDAP00000019059	ENSFDAP00000011193	Cell division cycle protein 20 like protein.	Intraflagellar transport protein 140 like protein.	0.732
CDC20	WDR35	ENSFDAP00000019059	ENSFDAP00000010354	Cell division cycle protein 20 like protein.	WD repeat-containing protein 35.	0.716
CDC20B	ANAPC4	ENSFDAP00000008502	ENSFDAP00000013764	Cell division cycle protein 20 like protein B.	Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.	0.977
CDC20B	FZR1	ENSFDAP00000008502	ENSFDAP00000003182	Cell division cycle protein 20 like protein B.	Fizzy-related protein like protein.	0.760
CDC20B	IFT140	ENSFDAP00000008502	ENSFDAP00000011193	Cell division cycle protein 20 like protein B.	Intraflagellar transport protein 140 like protein.	0.732
CDC20B	WDR35	ENSFDAP00000008502	ENSFDAP00000010354	Cell division cycle protein 20 like protein B.	WD repeat-containing protein 35.	0.716
EML5	ANAPC4	ENSFDAP00000010008	ENSFDAP00000013764	Echinoderm microtubule-associated protein-like 5.	Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.	0.729
EML5	IFT140	ENSFDAP00000010008	ENSFDAP00000011193	Echinoderm microtubule-associated protein-like 5.	Intraflagellar transport protein 140 like protein.	0.766
EML5	WDR35	ENSFDAP00000010008	ENSFDAP00000010354	Echinoderm microtubule-associated protein-like 5.	WD repeat-containing protein 35.	0.716
EML6	ANAPC4	ENSFDAP00000005951	ENSFDAP00000013764	Echinoderm microtubule-associated protein-like 6.	Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.	0.729
EML6	IFT140	ENSFDAP00000005951	ENSFDAP00000011193	Echinoderm microtubule-associated protein-like 6.	Intraflagellar transport protein 140 like protein.	0.766
EML6	WDR35	ENSFDAP00000005951	ENSFDAP00000010354	Echinoderm microtubule-associated protein-like 6.	WD repeat-containing protein 35.	0.716