9 items (Fukomys damarensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNDC3A	Fibronectin type-III domain-containing protein 3A. (1198 aa)
	ENSFDAP00000002920	annotation not available (87 aa)
	ERBB4	Receptor tyrosine-protein kinase erbB-4. (1280 aa)
	Ubc	Polyubiquitin-B. (235 aa)
	UBA52	KxDL motif containing 1. (232 aa)
	FNDC3B	Fibronectin type III domain-containing protein 3B. (1206 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (156 aa)
	NEDD4	E3 ubiquitin-protein ligase. (837 aa)
	WWP1	E3 ubiquitin-protein ligase. (918 aa)

Your Current Organism:

Fukomys damarensis

NCBI taxonomy Id: 885580
Other names: Coetomys damarensis, Cryptomys damarensis, Damara mole rat, Damara mole-rat, F. damarensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFDAP00000002920	FNDC3A	ENSFDAP00000002920	ENSFDAP00000020488	annotation not available	Fibronectin type-III domain-containing protein 3A.	0.470
ENSFDAP00000002920	FNDC3B	ENSFDAP00000002920	ENSFDAP00000009906	annotation not available	Fibronectin type III domain-containing protein 3B.	0.446
ENSFDAP00000002920	NEDD4	ENSFDAP00000002920	ENSFDAP00000015263	annotation not available	E3 ubiquitin-protein ligase.	0.894
ENSFDAP00000002920	RPS27A	ENSFDAP00000002920	ENSFDAP00000014104	annotation not available	Ubiquitin-40S ribosomal protein S27a.	0.998
ENSFDAP00000002920	UBA52	ENSFDAP00000002920	ENSFDAP00000022032	annotation not available	KxDL motif containing 1.	0.826
ENSFDAP00000002920	Ubc	ENSFDAP00000002920	ENSFDAP00000018389	annotation not available	Polyubiquitin-B.	0.987
ENSFDAP00000002920	WWP1	ENSFDAP00000002920	ENSFDAP00000015795	annotation not available	E3 ubiquitin-protein ligase.	0.903
ERBB4	NEDD4	ENSFDAP00000008733	ENSFDAP00000015263	Receptor tyrosine-protein kinase erbB-4.	E3 ubiquitin-protein ligase.	0.750
ERBB4	RPS27A	ENSFDAP00000008733	ENSFDAP00000014104	Receptor tyrosine-protein kinase erbB-4.	Ubiquitin-40S ribosomal protein S27a.	0.637
ERBB4	Ubc	ENSFDAP00000008733	ENSFDAP00000018389	Receptor tyrosine-protein kinase erbB-4.	Polyubiquitin-B.	0.720
ERBB4	WWP1	ENSFDAP00000008733	ENSFDAP00000015795	Receptor tyrosine-protein kinase erbB-4.	E3 ubiquitin-protein ligase.	0.793
FNDC3A	ENSFDAP00000002920	ENSFDAP00000020488	ENSFDAP00000002920	Fibronectin type-III domain-containing protein 3A.	annotation not available	0.470
FNDC3A	RPS27A	ENSFDAP00000020488	ENSFDAP00000014104	Fibronectin type-III domain-containing protein 3A.	Ubiquitin-40S ribosomal protein S27a.	0.478
FNDC3A	UBA52	ENSFDAP00000020488	ENSFDAP00000022032	Fibronectin type-III domain-containing protein 3A.	KxDL motif containing 1.	0.475
FNDC3B	ENSFDAP00000002920	ENSFDAP00000009906	ENSFDAP00000002920	Fibronectin type III domain-containing protein 3B.	annotation not available	0.446
FNDC3B	RPS27A	ENSFDAP00000009906	ENSFDAP00000014104	Fibronectin type III domain-containing protein 3B.	Ubiquitin-40S ribosomal protein S27a.	0.444
FNDC3B	UBA52	ENSFDAP00000009906	ENSFDAP00000022032	Fibronectin type III domain-containing protein 3B.	KxDL motif containing 1.	0.446
NEDD4	ENSFDAP00000002920	ENSFDAP00000015263	ENSFDAP00000002920	E3 ubiquitin-protein ligase.	annotation not available	0.894
NEDD4	ERBB4	ENSFDAP00000015263	ENSFDAP00000008733	E3 ubiquitin-protein ligase.	Receptor tyrosine-protein kinase erbB-4.	0.750
NEDD4	RPS27A	ENSFDAP00000015263	ENSFDAP00000014104	E3 ubiquitin-protein ligase.	Ubiquitin-40S ribosomal protein S27a.	0.971