12 items (Fukomys damarensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	IKBKB	Inhibitor of nuclear factor kappa-B kinase subunit beta. (756 aa)
	TRAF6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (543 aa)
	SQSTM1	Sequestosome-1. (400 aa)
	Ubc	Polyubiquitin-B. (235 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (156 aa)
	NGF	Beta-nerve growth factor; Belongs to the NGF-beta family. (305 aa)
	MYD88	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. (296 aa)
	UBA52	KxDL motif containing 1. (232 aa)
	RIPK2	Receptor-interacting serine/threonine-protein kinase 2. (482 aa)
	NGFR	Tumor necrosis factor receptor superfamily member 16. (362 aa)
	IRAK1	Interleukin 1 receptor associated kinase 1. (453 aa)
	ENSFDAP00000002920	annotation not available (87 aa)

Your Current Organism:

Fukomys damarensis

NCBI taxonomy Id: 885580
Other names: Coetomys damarensis, Cryptomys damarensis, Damara mole rat, Damara mole-rat, F. damarensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFDAP00000002920	IKBKB	ENSFDAP00000002920	ENSFDAP00000002634	annotation not available	Inhibitor of nuclear factor kappa-B kinase subunit beta.	0.659
ENSFDAP00000002920	IRAK1	ENSFDAP00000002920	ENSFDAP00000001973	annotation not available	Interleukin 1 receptor associated kinase 1.	0.684
ENSFDAP00000002920	MYD88	ENSFDAP00000002920	ENSFDAP00000008504	annotation not available	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.622
ENSFDAP00000002920	RIPK2	ENSFDAP00000002920	ENSFDAP00000019312	annotation not available	Receptor-interacting serine/threonine-protein kinase 2.	0.575
ENSFDAP00000002920	RPS27A	ENSFDAP00000002920	ENSFDAP00000014104	annotation not available	Ubiquitin-40S ribosomal protein S27a.	0.998
ENSFDAP00000002920	SQSTM1	ENSFDAP00000002920	ENSFDAP00000017565	annotation not available	Sequestosome-1.	0.777
ENSFDAP00000002920	TRAF6	ENSFDAP00000002920	ENSFDAP00000015339	annotation not available	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.963
ENSFDAP00000002920	UBA52	ENSFDAP00000002920	ENSFDAP00000022032	annotation not available	KxDL motif containing 1.	0.826
ENSFDAP00000002920	Ubc	ENSFDAP00000002920	ENSFDAP00000018389	annotation not available	Polyubiquitin-B.	0.987
IKBKB	ENSFDAP00000002920	ENSFDAP00000002634	ENSFDAP00000002920	Inhibitor of nuclear factor kappa-B kinase subunit beta.	annotation not available	0.659
IKBKB	IRAK1	ENSFDAP00000002634	ENSFDAP00000001973	Inhibitor of nuclear factor kappa-B kinase subunit beta.	Interleukin 1 receptor associated kinase 1.	0.850
IKBKB	MYD88	ENSFDAP00000002634	ENSFDAP00000008504	Inhibitor of nuclear factor kappa-B kinase subunit beta.	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.654
IKBKB	NGF	ENSFDAP00000002634	ENSFDAP00000009408	Inhibitor of nuclear factor kappa-B kinase subunit beta.	Beta-nerve growth factor; Belongs to the NGF-beta family.	0.625
IKBKB	NGFR	ENSFDAP00000002634	ENSFDAP00000005529	Inhibitor of nuclear factor kappa-B kinase subunit beta.	Tumor necrosis factor receptor superfamily member 16.	0.725
IKBKB	RIPK2	ENSFDAP00000002634	ENSFDAP00000019312	Inhibitor of nuclear factor kappa-B kinase subunit beta.	Receptor-interacting serine/threonine-protein kinase 2.	0.824
IKBKB	RPS27A	ENSFDAP00000002634	ENSFDAP00000014104	Inhibitor of nuclear factor kappa-B kinase subunit beta.	Ubiquitin-40S ribosomal protein S27a.	0.710
IKBKB	SQSTM1	ENSFDAP00000002634	ENSFDAP00000017565	Inhibitor of nuclear factor kappa-B kinase subunit beta.	Sequestosome-1.	0.770
IKBKB	TRAF6	ENSFDAP00000002634	ENSFDAP00000015339	Inhibitor of nuclear factor kappa-B kinase subunit beta.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.977
IKBKB	UBA52	ENSFDAP00000002634	ENSFDAP00000022032	Inhibitor of nuclear factor kappa-B kinase subunit beta.	KxDL motif containing 1.	0.659
IKBKB	Ubc	ENSFDAP00000002634	ENSFDAP00000018389	Inhibitor of nuclear factor kappa-B kinase subunit beta.	Polyubiquitin-B.	0.692