14 items (Fukomys damarensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Ubc	Polyubiquitin-B. (235 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (156 aa)
	DNER	Delta/notch like EGF repeat containing. (641 aa)
	ENSFDAP00000007008	annotation not available (309 aa)
	NOTCH1	Uncharacterized protein. (2309 aa)
	MIB1	E3 ubiquitin-protein ligase MIB1. (929 aa)
	ENSFDAP00000002920	annotation not available (87 aa)
	CNTN1	Contactin-1. (1016 aa)
	UBA52	KxDL motif containing 1. (232 aa)
	DTX1	Protein deltex-4. (510 aa)
	NEURL1	Neuralized-like protein 1A. (355 aa)
	DLK1	Delta like non-canonical Notch ligand 1. (356 aa)
	DTX2	Protein deltex-2. (619 aa)
	NEURL1B	E3 ubiquitin-protein ligase NEURL1B. (304 aa)

Your Current Organism:

Fukomys damarensis

NCBI taxonomy Id: 885580
Other names: Coetomys damarensis, Cryptomys damarensis, Damara mole rat, Damara mole-rat, F. damarensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNTN1	NOTCH1	ENSFDAP00000019460	ENSFDAP00000005618	Contactin-1.	Uncharacterized protein.	0.416
DLK1	NEURL1	ENSFDAP00000022855	ENSFDAP00000004844	Delta like non-canonical Notch ligand 1.	Neuralized-like protein 1A.	0.431
DLK1	NEURL1B	ENSFDAP00000022855	ENSFDAP00000015904	Delta like non-canonical Notch ligand 1.	E3 ubiquitin-protein ligase NEURL1B.	0.431
DLK1	NOTCH1	ENSFDAP00000022855	ENSFDAP00000005618	Delta like non-canonical Notch ligand 1.	Uncharacterized protein.	0.700
DLK1	RPS27A	ENSFDAP00000022855	ENSFDAP00000014104	Delta like non-canonical Notch ligand 1.	Ubiquitin-40S ribosomal protein S27a.	0.471
DNER	DTX1	ENSFDAP00000009647	ENSFDAP00000022176	Delta/notch like EGF repeat containing.	Protein deltex-4.	0.617
DNER	NEURL1	ENSFDAP00000009647	ENSFDAP00000004844	Delta/notch like EGF repeat containing.	Neuralized-like protein 1A.	0.431
DNER	NEURL1B	ENSFDAP00000009647	ENSFDAP00000015904	Delta/notch like EGF repeat containing.	E3 ubiquitin-protein ligase NEURL1B.	0.431
DNER	NOTCH1	ENSFDAP00000009647	ENSFDAP00000005618	Delta/notch like EGF repeat containing.	Uncharacterized protein.	0.517
DNER	RPS27A	ENSFDAP00000009647	ENSFDAP00000014104	Delta/notch like EGF repeat containing.	Ubiquitin-40S ribosomal protein S27a.	0.471
DTX1	DNER	ENSFDAP00000022176	ENSFDAP00000009647	Protein deltex-4.	Delta/notch like EGF repeat containing.	0.617
DTX1	DTX2	ENSFDAP00000022176	ENSFDAP00000023311	Protein deltex-4.	Protein deltex-2.	0.791
DTX1	ENSFDAP00000002920	ENSFDAP00000022176	ENSFDAP00000002920	Protein deltex-4.	annotation not available	0.638
DTX1	ENSFDAP00000007008	ENSFDAP00000022176	ENSFDAP00000007008	Protein deltex-4.	annotation not available	0.793
DTX1	NOTCH1	ENSFDAP00000022176	ENSFDAP00000005618	Protein deltex-4.	Uncharacterized protein.	0.951
DTX1	RPS27A	ENSFDAP00000022176	ENSFDAP00000014104	Protein deltex-4.	Ubiquitin-40S ribosomal protein S27a.	0.792
DTX1	UBA52	ENSFDAP00000022176	ENSFDAP00000022032	Protein deltex-4.	KxDL motif containing 1.	0.638
DTX1	Ubc	ENSFDAP00000022176	ENSFDAP00000018389	Protein deltex-4.	Polyubiquitin-B.	0.774
DTX2	DTX1	ENSFDAP00000023311	ENSFDAP00000022176	Protein deltex-2.	Protein deltex-4.	0.791
DTX2	ENSFDAP00000007008	ENSFDAP00000023311	ENSFDAP00000007008	Protein deltex-2.	annotation not available	0.721