27 items (Fukomys damarensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TGIF2	TGFB induced factor homeobox 2. (237 aa)
	UBE2D1	Ubiquitin-conjugating enzyme E2 D1; Belongs to the ubiquitin-conjugating enzyme family. (140 aa)
	UBA52	KxDL motif containing 1. (232 aa)
	SKIL	Ski-like protein. (679 aa)
	NCOR1	Nuclear receptor corepressor 1. (2434 aa)
	USP9X	Putative ubiquitin carboxyl-terminal hydrolase FAF-X; Belongs to the peptidase C19 family. (2554 aa)
	SMAD4	Mothers against decapentaplegic homolog. (552 aa)
	HDAC1	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (482 aa)
	Tgif1	Homeobox protein TGIF1. (79 aa)
	MAPK1	Mitogen-activated protein kinase. (320 aa)
	MAPK3	Mitogen-activated protein kinase. (322 aa)
	Ubc	Polyubiquitin-B. (235 aa)
	TRIM33	E3 ubiquitin-protein ligase TRIM33. (951 aa)
	SMAD2	Mothers against decapentaplegic homolog. (467 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (156 aa)
	NEDD4L	E3 ubiquitin-protein ligase. (983 aa)
	ATP1B4	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family. (348 aa)
	PARP1	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (973 aa)
	ENSFDAP00000007247	annotation not available (119 aa)
	SMURF2	E3 ubiquitin-protein ligase. (742 aa)
	SKI	Ski oncogene. (704 aa)
	ENSFDAP00000005475	annotation not available (139 aa)
	SMAD3	Mothers against decapentaplegic homolog. (429 aa)
	SNW1	SNW domain containing 1. (537 aa)
	NCOR2	Nuclear receptor corepressor 2. (2399 aa)
	ENSFDAP00000002920	annotation not available (87 aa)
	PPM1A	Protein phosphatase 1A; Belongs to the PP2C family. (382 aa)

Your Current Organism:

Fukomys damarensis

NCBI taxonomy Id: 885580
Other names: Coetomys damarensis, Cryptomys damarensis, Damara mole rat, Damara mole-rat, F. damarensis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP1B4	SNW1	ENSFDAP00000012029	ENSFDAP00000004529	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.	SNW domain containing 1.	0.874
ENSFDAP00000002920	ENSFDAP00000005475	ENSFDAP00000002920	ENSFDAP00000005475	annotation not available	annotation not available	0.800
ENSFDAP00000002920	ENSFDAP00000007247	ENSFDAP00000002920	ENSFDAP00000007247	annotation not available	annotation not available	0.800
ENSFDAP00000002920	HDAC1	ENSFDAP00000002920	ENSFDAP00000020515	annotation not available	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.601
ENSFDAP00000002920	MAPK1	ENSFDAP00000002920	ENSFDAP00000020110	annotation not available	Mitogen-activated protein kinase.	0.577
ENSFDAP00000002920	MAPK3	ENSFDAP00000002920	ENSFDAP00000019537	annotation not available	Mitogen-activated protein kinase.	0.577
ENSFDAP00000002920	NCOR1	ENSFDAP00000002920	ENSFDAP00000021441	annotation not available	Nuclear receptor corepressor 1.	0.626
ENSFDAP00000002920	NCOR2	ENSFDAP00000002920	ENSFDAP00000003467	annotation not available	Nuclear receptor corepressor 2.	0.626
ENSFDAP00000002920	NEDD4L	ENSFDAP00000002920	ENSFDAP00000013733	annotation not available	E3 ubiquitin-protein ligase.	0.894
ENSFDAP00000002920	RPS27A	ENSFDAP00000002920	ENSFDAP00000014104	annotation not available	Ubiquitin-40S ribosomal protein S27a.	0.998
ENSFDAP00000002920	SMAD2	ENSFDAP00000002920	ENSFDAP00000015181	annotation not available	Mothers against decapentaplegic homolog.	0.439
ENSFDAP00000002920	SMAD3	ENSFDAP00000002920	ENSFDAP00000005300	annotation not available	Mothers against decapentaplegic homolog.	0.439
ENSFDAP00000002920	SMURF2	ENSFDAP00000002920	ENSFDAP00000007112	annotation not available	E3 ubiquitin-protein ligase.	0.949
ENSFDAP00000002920	TRIM33	ENSFDAP00000002920	ENSFDAP00000017100	annotation not available	E3 ubiquitin-protein ligase TRIM33.	0.564
ENSFDAP00000002920	UBA52	ENSFDAP00000002920	ENSFDAP00000022032	annotation not available	KxDL motif containing 1.	0.826
ENSFDAP00000002920	UBE2D1	ENSFDAP00000002920	ENSFDAP00000022664	annotation not available	Ubiquitin-conjugating enzyme E2 D1; Belongs to the ubiquitin-conjugating enzyme family.	0.890
ENSFDAP00000002920	USP9X	ENSFDAP00000002920	ENSFDAP00000020881	annotation not available	Putative ubiquitin carboxyl-terminal hydrolase FAF-X; Belongs to the peptidase C19 family.	0.610
ENSFDAP00000002920	Ubc	ENSFDAP00000002920	ENSFDAP00000018389	annotation not available	Polyubiquitin-B.	0.987
ENSFDAP00000005475	ENSFDAP00000002920	ENSFDAP00000005475	ENSFDAP00000002920	annotation not available	annotation not available	0.800
ENSFDAP00000005475	NEDD4L	ENSFDAP00000005475	ENSFDAP00000013733	annotation not available	E3 ubiquitin-protein ligase.	0.641