54 items (Fukomys damarensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TNC	Tenascin. (2201 aa)
	MATN4	Matrilin-4. (624 aa)
	COL6A3	Collagen alpha-3(VI) chain. (2515 aa)
	COL2A1	Collagen alpha-1(II) chain. (1487 aa)
	Vcan	Versican. (613 aa)
	MCMDC2	Minichromosome maintenance domain containing 2. (681 aa)
	ITGB5	Integrin subunit beta 5. (794 aa)
	ENSFDAP00000003664	annotation not available (75 aa)
	HSPG2	Basement membrane-specific heparan sulfate proteoglycan core protein. (4246 aa)
	LRP4	Low-density lipoprotein receptor-related protein 4. (1887 aa)
	Col6a1	Collagen alpha-1(VI) chain. (1027 aa)
	MUSK	Muscle, skeletal receptor tyrosine-protein kinase. (871 aa)
	ITGAV	Integrin alpha-V; Belongs to the integrin alpha chain family. (996 aa)
	COMP	Cartilage oligomeric matrix protein. (712 aa)
	MATN1	Cartilage matrix protein. (496 aa)
	NCAN	Neurocan. (1143 aa)
	BGN	Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily. (368 aa)
	DMP1	Dentin matrix acidic phosphoprotein 1. (488 aa)
	LOC104858517	Laminin subunit alpha-2. (1355 aa)
	LAMA1	Laminin subunit alpha-1. (2977 aa)
	SPARC	SPARC. (304 aa)
	APP	Amyloid beta A4 protein. (766 aa)
	Itga9	Integrin alpha-9; Belongs to the integrin alpha chain family. (973 aa)
	COL1A2	Collagen alpha-2(I) chain. (1366 aa)
	VTN	Vitronectin. (431 aa)
	MATN3	Matrilin-3. (411 aa)
	LAMA3	Laminin subunit alpha-3. (2791 aa)
	Col9a1	Collagen alpha-1(IX) chain. (910 aa)
	TNXB	Tenascin XB. (527 aa)
	COL5A2	Collagen alpha-2(V) chain. (1499 aa)
	H920_08687	Integrin alpha-9; Belongs to the integrin alpha chain family. (234 aa)
	ITGA7	Integrin alpha-7; Belongs to the integrin alpha chain family. (1137 aa)
	COL1A1	Collagen alpha-1(I) chain. (1453 aa)
	Itgb3	Integrin beta; Belongs to the integrin beta chain family. (761 aa)
	VWA2	Von Willebrand factor A domain containing 2. (769 aa)
	H920_03964	Aggrecan core protein. (711 aa)
	SERPINE1	Plasminogen activator inhibitor 1; Belongs to the serpin family. (402 aa)
	LAMC1	Laminin subunit gamma-1. (1576 aa)
	LAMB2	Laminin subunit beta-2. (1801 aa)
	BCAN	Brevican. (845 aa)
	TNR	Tenascin-R. (1358 aa)
	AGRN	Agrin. (2039 aa)
	DCN	Decorin; May affect the rate of fibrils formation. (357 aa)
	COL3A1	Collagen alpha-1(III) chain. (1463 aa)
	ITGA8	Integrin alpha-8; Belongs to the integrin alpha chain family. (992 aa)
	LOC104876911	Integrin alpha-X. (144 aa)
	ASPN	Asporin. (373 aa)
	ITGB6	Integrin beta; Belongs to the integrin beta chain family. (807 aa)
	HAPLN1	Hyaluronan and proteoglycan link protein 1. (354 aa)
	ITGB1	Integrin beta; Belongs to the integrin beta chain family. (803 aa)
	COL5A1	Collagen type V alpha 1 chain. (1809 aa)
	ITGA2	Integrin alpha-2; Belongs to the integrin alpha chain family. (1179 aa)
	LAMA5	Laminin subunit alpha-5. (3409 aa)
	FN1	Fibronectin. (2477 aa)

Your Current Organism:

Fukomys damarensis

NCBI taxonomy Id: 885580
Other names: Coetomys damarensis, Cryptomys damarensis, Damara mole rat, Damara mole-rat, F. damarensis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGRN	ASPN	ENSFDAP00000018704	ENSFDAP00000021085	Agrin.	Asporin.	0.534
AGRN	BCAN	ENSFDAP00000018704	ENSFDAP00000018463	Agrin.	Brevican.	0.731
AGRN	BGN	ENSFDAP00000018704	ENSFDAP00000009282	Agrin.	Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily.	0.766
AGRN	DCN	ENSFDAP00000018704	ENSFDAP00000018802	Agrin.	Decorin; May affect the rate of fibrils formation.	0.714
AGRN	HSPG2	ENSFDAP00000018704	ENSFDAP00000004628	Agrin.	Basement membrane-specific heparan sulfate proteoglycan core protein.	0.695
AGRN	ITGA2	ENSFDAP00000018704	ENSFDAP00000022357	Agrin.	Integrin alpha-2; Belongs to the integrin alpha chain family.	0.541
AGRN	ITGA7	ENSFDAP00000018704	ENSFDAP00000014864	Agrin.	Integrin alpha-7; Belongs to the integrin alpha chain family.	0.433
AGRN	ITGB1	ENSFDAP00000018704	ENSFDAP00000022103	Agrin.	Integrin beta; Belongs to the integrin beta chain family.	0.538
AGRN	ITGB5	ENSFDAP00000018704	ENSFDAP00000003270	Agrin.	Integrin subunit beta 5.	0.454
AGRN	ITGB6	ENSFDAP00000018704	ENSFDAP00000021425	Agrin.	Integrin beta; Belongs to the integrin beta chain family.	0.454
AGRN	Itgb3	ENSFDAP00000018704	ENSFDAP00000016006	Agrin.	Integrin beta; Belongs to the integrin beta chain family.	0.454
AGRN	LAMA1	ENSFDAP00000018704	ENSFDAP00000009903	Agrin.	Laminin subunit alpha-1.	0.476
AGRN	LRP4	ENSFDAP00000018704	ENSFDAP00000004937	Agrin.	Low-density lipoprotein receptor-related protein 4.	0.985
AGRN	MUSK	ENSFDAP00000018704	ENSFDAP00000006586	Agrin.	Muscle, skeletal receptor tyrosine-protein kinase.	0.764
AGRN	NCAN	ENSFDAP00000018704	ENSFDAP00000008761	Agrin.	Neurocan.	0.575
AGRN	Vcan	ENSFDAP00000018704	ENSFDAP00000002137	Agrin.	Versican.	0.579
APP	BGN	ENSFDAP00000010719	ENSFDAP00000009282	Amyloid beta A4 protein.	Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily.	0.424
APP	DMP1	ENSFDAP00000010719	ENSFDAP00000009417	Amyloid beta A4 protein.	Dentin matrix acidic phosphoprotein 1.	0.456
APP	H920_08687	ENSFDAP00000010719	ENSFDAP00000014636	Amyloid beta A4 protein.	Integrin alpha-9; Belongs to the integrin alpha chain family.	0.427
APP	HSPG2	ENSFDAP00000010719	ENSFDAP00000004628	Amyloid beta A4 protein.	Basement membrane-specific heparan sulfate proteoglycan core protein.	0.467