15 items (Fukomys damarensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSFDAP00000002920	annotation not available (87 aa)
	STING1	Transmembrane protein 173. (378 aa)
	TRIM21	E3 ubiquitin-protein ligase TRIM21. (467 aa)
	NLRP4	NACHT, LRR and PYD domains-containing protein 4. (984 aa)
	TRIM32	E3 ubiquitin-protein ligase TRIM32. (653 aa)
	TREX1	Three prime repair exonuclease 1. (314 aa)
	UBA52	KxDL motif containing 1. (232 aa)
	Ubc	Polyubiquitin-B. (235 aa)
	TBK1	Serine/threonine-protein kinase TBK1. (729 aa)
	IRF3	Interferon regulatory factor 3. (428 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (156 aa)
	DDX41	Putative ATP-dependent RNA helicase DDX41. (622 aa)
	ENSFDAP00000007008	annotation not available (309 aa)
	TREX2	Three prime repair exonuclease 2. (236 aa)
	TRIM56	E3 ubiquitin-protein ligase TRIM56. (733 aa)

Your Current Organism:

Fukomys damarensis

NCBI taxonomy Id: 885580
Other names: Coetomys damarensis, Cryptomys damarensis, Damara mole rat, Damara mole-rat, F. damarensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX41	IRF3	ENSFDAP00000009640	ENSFDAP00000017443	Putative ATP-dependent RNA helicase DDX41.	Interferon regulatory factor 3.	0.574
DDX41	STING1	ENSFDAP00000009640	ENSFDAP00000001813	Putative ATP-dependent RNA helicase DDX41.	Transmembrane protein 173.	0.683
DDX41	TBK1	ENSFDAP00000009640	ENSFDAP00000017895	Putative ATP-dependent RNA helicase DDX41.	Serine/threonine-protein kinase TBK1.	0.695
DDX41	TRIM21	ENSFDAP00000009640	ENSFDAP00000021360	Putative ATP-dependent RNA helicase DDX41.	E3 ubiquitin-protein ligase TRIM21.	0.874
DDX41	TRIM32	ENSFDAP00000009640	ENSFDAP00000020020	Putative ATP-dependent RNA helicase DDX41.	E3 ubiquitin-protein ligase TRIM32.	0.518
DDX41	TRIM56	ENSFDAP00000009640	ENSFDAP00000004646	Putative ATP-dependent RNA helicase DDX41.	E3 ubiquitin-protein ligase TRIM56.	0.611
DDX41	Ubc	ENSFDAP00000009640	ENSFDAP00000018389	Putative ATP-dependent RNA helicase DDX41.	Polyubiquitin-B.	0.635
ENSFDAP00000002920	NLRP4	ENSFDAP00000002920	ENSFDAP00000020144	annotation not available	NACHT, LRR and PYD domains-containing protein 4.	0.571
ENSFDAP00000002920	RPS27A	ENSFDAP00000002920	ENSFDAP00000014104	annotation not available	Ubiquitin-40S ribosomal protein S27a.	0.998
ENSFDAP00000002920	TBK1	ENSFDAP00000002920	ENSFDAP00000017895	annotation not available	Serine/threonine-protein kinase TBK1.	0.642
ENSFDAP00000002920	TRIM21	ENSFDAP00000002920	ENSFDAP00000021360	annotation not available	E3 ubiquitin-protein ligase TRIM21.	0.781
ENSFDAP00000002920	TRIM32	ENSFDAP00000002920	ENSFDAP00000020020	annotation not available	E3 ubiquitin-protein ligase TRIM32.	0.542
ENSFDAP00000002920	TRIM56	ENSFDAP00000002920	ENSFDAP00000004646	annotation not available	E3 ubiquitin-protein ligase TRIM56.	0.513
ENSFDAP00000002920	UBA52	ENSFDAP00000002920	ENSFDAP00000022032	annotation not available	KxDL motif containing 1.	0.826
ENSFDAP00000002920	Ubc	ENSFDAP00000002920	ENSFDAP00000018389	annotation not available	Polyubiquitin-B.	0.987
ENSFDAP00000007008	NLRP4	ENSFDAP00000007008	ENSFDAP00000020144	annotation not available	NACHT, LRR and PYD domains-containing protein 4.	0.858
ENSFDAP00000007008	TBK1	ENSFDAP00000007008	ENSFDAP00000017895	annotation not available	Serine/threonine-protein kinase TBK1.	0.576
IRF3	DDX41	ENSFDAP00000017443	ENSFDAP00000009640	Interferon regulatory factor 3.	Putative ATP-dependent RNA helicase DDX41.	0.574
IRF3	NLRP4	ENSFDAP00000017443	ENSFDAP00000020144	Interferon regulatory factor 3.	NACHT, LRR and PYD domains-containing protein 4.	0.473
IRF3	RPS27A	ENSFDAP00000017443	ENSFDAP00000014104	Interferon regulatory factor 3.	Ubiquitin-40S ribosomal protein S27a.	0.631