42 items (Fukomys damarensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Atg5	Autophagy protein 5; Involved in autophagic vesicle formation. (198 aa)
	PINK1	Serine/threonine-protein kinase PINK1, mitochondrial. (446 aa)
	TOMM40L	Mitochondrial import receptor subunit TOM40B. (308 aa)
	ENSFDAP00000022809	annotation not available (250 aa)
	UBA52	KxDL motif containing 1. (232 aa)
	FUNDC1	FUN14 domain-containing protein 1. (211 aa)
	Mfn1	Mitofusin-1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (239 aa)
	LOC104868700	Uncharacterized protein. (301 aa)
	Ly6g5b	Uncharacterized protein. (193 aa)
	FNDC3A	Fibronectin type-III domain-containing protein 3A. (1198 aa)
	TOMM7	Mitochondrial import receptor subunit TOM7 like protein. (55 aa)
	CSNK2B	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (183 aa)
	ULK1	Serine/threonine-protein kinase ULK1. (1043 aa)
	TOMM40	Mitochondrial import receptor subunit TOM40 like protein. (314 aa)
	TOMM20	Mitochondrial import receptor subunit TOM20 like protein. (145 aa)
	Vdac1	Voltage-dependent anion-selective channel protein 1. (285 aa)
	Ubc	Polyubiquitin-B. (235 aa)
	Map1lc3b	Microtubule associated protein 1 light chain 3 beta. (112 aa)
	ENSFDAP00000017826	annotation not available (133 aa)
	LOC104849456	E3 ubiquitin-protein ligase parkin. (243 aa)
	SQSTM1	Sequestosome-1. (400 aa)
	PGAM5	PGAM family member 5, mitochondrial serine/threonine protein phosphatase. (244 aa)
	ULK2	Serine/threonine-protein kinase ULK2. (1057 aa)
	TOMM70	Mitochondrial import receptor subunit TOM70. (599 aa)
	H920_07688	Voltage-dependent anion-selective channel protein 1. (239 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (156 aa)
	MTERF3	mTERF domain-containing protein 1, mitochondrial. (423 aa)
	TOMM22	Mitochondrial import receptor subunit TOM22 like protein. (142 aa)
	FUNDC2	FUN14 domain containing 2. (164 aa)
	ENSFDAP00000011772	annotation not available (273 aa)
	MAP1LC3A	Microtubule associated protein 1 light chain 3 alpha. (89 aa)
	Gsap	Gamma-secretase-activating protein. (175 aa)
	FNDC3B	Fibronectin type III domain-containing protein 3B. (1206 aa)
	Csnk2a1	Casein kinase II subunit alpha; Belongs to the protein kinase superfamily. (391 aa)
	MFN2	Mitofusin-2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (762 aa)
	Tomm5	Mitochondrial import receptor subunit TOM5 like protein. (51 aa)
	ENSFDAP00000007466	annotation not available (44 aa)
	ATG12	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (141 aa)
	CSNK2A2	Casein kinase II subunit alpha; Belongs to the protein kinase superfamily. (315 aa)
	ENSFDAP00000002920	annotation not available (87 aa)
	ENSFDAP00000002789	annotation not available (79 aa)
	TOMM6	Translocase of outer mitochondrial membrane 6. (74 aa)

Your Current Organism:

Fukomys damarensis

NCBI taxonomy Id: 885580
Other names: Coetomys damarensis, Cryptomys damarensis, Damara mole rat, Damara mole-rat, F. damarensis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATG12	Atg5	ENSFDAP00000006620	ENSFDAP00000013584	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.994
ATG12	ENSFDAP00000007466	ENSFDAP00000006620	ENSFDAP00000007466	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	annotation not available	0.994
ATG12	ENSFDAP00000011772	ENSFDAP00000006620	ENSFDAP00000011772	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	annotation not available	0.595
ATG12	ENSFDAP00000017826	ENSFDAP00000006620	ENSFDAP00000017826	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	annotation not available	0.994
ATG12	ENSFDAP00000022809	ENSFDAP00000006620	ENSFDAP00000022809	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	annotation not available	0.595
ATG12	FUNDC1	ENSFDAP00000006620	ENSFDAP00000021668	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	FUN14 domain-containing protein 1.	0.703
ATG12	FUNDC2	ENSFDAP00000006620	ENSFDAP00000012034	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	FUN14 domain containing 2.	0.703
ATG12	Gsap	ENSFDAP00000006620	ENSFDAP00000010572	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Gamma-secretase-activating protein.	0.796
ATG12	H920_07688	ENSFDAP00000006620	ENSFDAP00000014527	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Voltage-dependent anion-selective channel protein 1.	0.595
ATG12	MAP1LC3A	ENSFDAP00000006620	ENSFDAP00000010931	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Microtubule associated protein 1 light chain 3 alpha.	0.913
ATG12	MFN2	ENSFDAP00000006620	ENSFDAP00000008089	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Mitofusin-2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.754
ATG12	Map1lc3b	ENSFDAP00000006620	ENSFDAP00000017960	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Microtubule associated protein 1 light chain 3 beta.	0.926
ATG12	Mfn1	ENSFDAP00000006620	ENSFDAP00000021520	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Mitofusin-1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.754
ATG12	PINK1	ENSFDAP00000006620	ENSFDAP00000022901	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Serine/threonine-protein kinase PINK1, mitochondrial.	0.581
ATG12	SQSTM1	ENSFDAP00000006620	ENSFDAP00000017565	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Sequestosome-1.	0.869
ATG12	ULK1	ENSFDAP00000006620	ENSFDAP00000019802	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Serine/threonine-protein kinase ULK1.	0.970
ATG12	ULK2	ENSFDAP00000006620	ENSFDAP00000016191	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Serine/threonine-protein kinase ULK2.	0.961
ATG12	Vdac1	ENSFDAP00000006620	ENSFDAP00000019379	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Voltage-dependent anion-selective channel protein 1.	0.595
Atg5	ATG12	ENSFDAP00000013584	ENSFDAP00000006620	Autophagy protein 5; Involved in autophagic vesicle formation.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.994
Atg5	ENSFDAP00000011772	ENSFDAP00000013584	ENSFDAP00000011772	Autophagy protein 5; Involved in autophagic vesicle formation.	annotation not available	0.488