30 items (Fukomys damarensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSFDAP00000002920	annotation not available (87 aa)
	H920_07688	Voltage-dependent anion-selective channel protein 1. (239 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (156 aa)
	Atg5	Autophagy protein 5; Involved in autophagic vesicle formation. (198 aa)
	MTERF3	mTERF domain-containing protein 1, mitochondrial. (423 aa)
	TOMM22	Mitochondrial import receptor subunit TOM22 like protein. (142 aa)
	ENSFDAP00000011772	annotation not available (273 aa)
	MAP1LC3A	Microtubule associated protein 1 light chain 3 alpha. (89 aa)
	Gsap	Gamma-secretase-activating protein. (175 aa)
	MFN2	Mitofusin-2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (762 aa)
	Tomm5	Mitochondrial import receptor subunit TOM5 like protein. (51 aa)
	ENSFDAP00000007466	annotation not available (44 aa)
	ATG12	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (141 aa)
	ENSFDAP00000002789	annotation not available (79 aa)
	TOMM6	Translocase of outer mitochondrial membrane 6. (74 aa)
	PINK1	Serine/threonine-protein kinase PINK1, mitochondrial. (446 aa)
	TOMM40L	Mitochondrial import receptor subunit TOM40B. (308 aa)
	ENSFDAP00000022809	annotation not available (250 aa)
	UBA52	KxDL motif containing 1. (232 aa)
	Mfn1	Mitofusin-1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (239 aa)
	TOMM7	Mitochondrial import receptor subunit TOM7 like protein. (55 aa)
	TOMM40	Mitochondrial import receptor subunit TOM40 like protein. (314 aa)
	TOMM20	Mitochondrial import receptor subunit TOM20 like protein. (145 aa)
	Vdac1	Voltage-dependent anion-selective channel protein 1. (285 aa)
	Ubc	Polyubiquitin-B. (235 aa)
	Map1lc3b	Microtubule associated protein 1 light chain 3 beta. (112 aa)
	ENSFDAP00000017826	annotation not available (133 aa)
	LOC104849456	E3 ubiquitin-protein ligase parkin. (243 aa)
	SQSTM1	Sequestosome-1. (400 aa)
	TOMM70	Mitochondrial import receptor subunit TOM70. (599 aa)

Your Current Organism:

Fukomys damarensis

NCBI taxonomy Id: 885580
Other names: Coetomys damarensis, Cryptomys damarensis, Damara mole rat, Damara mole-rat, F. damarensis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATG12	Atg5	ENSFDAP00000006620	ENSFDAP00000013584	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.994
ATG12	ENSFDAP00000007466	ENSFDAP00000006620	ENSFDAP00000007466	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	annotation not available	0.994
ATG12	ENSFDAP00000011772	ENSFDAP00000006620	ENSFDAP00000011772	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	annotation not available	0.595
ATG12	ENSFDAP00000017826	ENSFDAP00000006620	ENSFDAP00000017826	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	annotation not available	0.994
ATG12	ENSFDAP00000022809	ENSFDAP00000006620	ENSFDAP00000022809	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	annotation not available	0.595
ATG12	Gsap	ENSFDAP00000006620	ENSFDAP00000010572	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Gamma-secretase-activating protein.	0.796
ATG12	H920_07688	ENSFDAP00000006620	ENSFDAP00000014527	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Voltage-dependent anion-selective channel protein 1.	0.595
ATG12	MAP1LC3A	ENSFDAP00000006620	ENSFDAP00000010931	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Microtubule associated protein 1 light chain 3 alpha.	0.913
ATG12	MFN2	ENSFDAP00000006620	ENSFDAP00000008089	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Mitofusin-2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.754
ATG12	Map1lc3b	ENSFDAP00000006620	ENSFDAP00000017960	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Microtubule associated protein 1 light chain 3 beta.	0.926
ATG12	Mfn1	ENSFDAP00000006620	ENSFDAP00000021520	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Mitofusin-1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.754
ATG12	PINK1	ENSFDAP00000006620	ENSFDAP00000022901	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Serine/threonine-protein kinase PINK1, mitochondrial.	0.581
ATG12	SQSTM1	ENSFDAP00000006620	ENSFDAP00000017565	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Sequestosome-1.	0.869
ATG12	Vdac1	ENSFDAP00000006620	ENSFDAP00000019379	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Voltage-dependent anion-selective channel protein 1.	0.595
Atg5	ATG12	ENSFDAP00000013584	ENSFDAP00000006620	Autophagy protein 5; Involved in autophagic vesicle formation.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.994
Atg5	ENSFDAP00000011772	ENSFDAP00000013584	ENSFDAP00000011772	Autophagy protein 5; Involved in autophagic vesicle formation.	annotation not available	0.488
Atg5	ENSFDAP00000017826	ENSFDAP00000013584	ENSFDAP00000017826	Autophagy protein 5; Involved in autophagic vesicle formation.	annotation not available	0.895
Atg5	ENSFDAP00000022809	ENSFDAP00000013584	ENSFDAP00000022809	Autophagy protein 5; Involved in autophagic vesicle formation.	annotation not available	0.488
Atg5	Gsap	ENSFDAP00000013584	ENSFDAP00000010572	Autophagy protein 5; Involved in autophagic vesicle formation.	Gamma-secretase-activating protein.	0.731
Atg5	H920_07688	ENSFDAP00000013584	ENSFDAP00000014527	Autophagy protein 5; Involved in autophagic vesicle formation.	Voltage-dependent anion-selective channel protein 1.	0.488