16 items (Fukomys damarensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSFDAP00000018569	annotation not available (445 aa)
	LOC104849456	E3 ubiquitin-protein ligase parkin. (243 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (156 aa)
	ATXN3	Ataxin-3. (355 aa)
	RAD23B	UV excision repair protein RAD23 like protein B. (396 aa)
	JOSD1	Josephin-1. (202 aa)
	ENSFDAP00000002789	annotation not available (79 aa)
	ENSFDAP00000002920	annotation not available (87 aa)
	JOSD2	Josephin domain containing 2. (188 aa)
	Vcp	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family. (800 aa)
	H920_08841	Spermatogenesis-associated protein 5-like protein 1; Belongs to the AAA ATPase family. (598 aa)
	UBA52	KxDL motif containing 1. (232 aa)
	SPATA5	Spermatogenesis-associated protein 5. (882 aa)
	RAD23A	UV excision repair protein RAD23 like protein A. (362 aa)
	ASPDH	Putative L-aspartate dehydrogenase. (284 aa)
	Ubc	Polyubiquitin-B. (235 aa)

Your Current Organism:

Fukomys damarensis

NCBI taxonomy Id: 885580
Other names: Coetomys damarensis, Cryptomys damarensis, Damara mole rat, Damara mole-rat, F. damarensis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATXN3	ENSFDAP00000002789	ENSFDAP00000013777	ENSFDAP00000002789	Ataxin-3.	annotation not available	0.906
ATXN3	ENSFDAP00000002920	ENSFDAP00000013777	ENSFDAP00000002920	Ataxin-3.	annotation not available	0.843
ATXN3	ENSFDAP00000018569	ENSFDAP00000013777	ENSFDAP00000018569	Ataxin-3.	annotation not available	0.933
ATXN3	H920_08841	ENSFDAP00000013777	ENSFDAP00000011722	Ataxin-3.	Spermatogenesis-associated protein 5-like protein 1; Belongs to the AAA ATPase family.	0.911
ATXN3	JOSD1	ENSFDAP00000013777	ENSFDAP00000000913	Ataxin-3.	Josephin-1.	0.570
ATXN3	JOSD2	ENSFDAP00000013777	ENSFDAP00000006017	Ataxin-3.	Josephin domain containing 2.	0.549
ATXN3	LOC104849456	ENSFDAP00000013777	ENSFDAP00000017663	Ataxin-3.	E3 ubiquitin-protein ligase parkin.	0.906
ATXN3	RAD23A	ENSFDAP00000013777	ENSFDAP00000020428	Ataxin-3.	UV excision repair protein RAD23 like protein A.	0.924
ATXN3	RAD23B	ENSFDAP00000013777	ENSFDAP00000012449	Ataxin-3.	UV excision repair protein RAD23 like protein B.	0.892
ATXN3	RPS27A	ENSFDAP00000013777	ENSFDAP00000014104	Ataxin-3.	Ubiquitin-40S ribosomal protein S27a.	0.958
ATXN3	SPATA5	ENSFDAP00000013777	ENSFDAP00000021309	Ataxin-3.	Spermatogenesis-associated protein 5.	0.911
ATXN3	UBA52	ENSFDAP00000013777	ENSFDAP00000022032	Ataxin-3.	KxDL motif containing 1.	0.898
ATXN3	Ubc	ENSFDAP00000013777	ENSFDAP00000018389	Ataxin-3.	Polyubiquitin-B.	0.961
ATXN3	Vcp	ENSFDAP00000013777	ENSFDAP00000009072	Ataxin-3.	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	0.933
ENSFDAP00000002789	ATXN3	ENSFDAP00000002789	ENSFDAP00000013777	annotation not available	Ataxin-3.	0.906
ENSFDAP00000002789	ENSFDAP00000002920	ENSFDAP00000002789	ENSFDAP00000002920	annotation not available	annotation not available	0.962
ENSFDAP00000002789	ENSFDAP00000018569	ENSFDAP00000002789	ENSFDAP00000018569	annotation not available	annotation not available	0.565
ENSFDAP00000002789	H920_08841	ENSFDAP00000002789	ENSFDAP00000011722	annotation not available	Spermatogenesis-associated protein 5-like protein 1; Belongs to the AAA ATPase family.	0.483
ENSFDAP00000002789	LOC104849456	ENSFDAP00000002789	ENSFDAP00000017663	annotation not available	E3 ubiquitin-protein ligase parkin.	0.770
ENSFDAP00000002789	RAD23A	ENSFDAP00000002789	ENSFDAP00000020428	annotation not available	UV excision repair protein RAD23 like protein A.	0.725