STRINGSTRING
ATRIP ATRIP NBN NBN ENSFDAP00000006648 ENSFDAP00000006648 PPP4C PPP4C RMI2 RMI2 Spidr Spidr Rad50 Rad50 RMI1 RMI1 PIAS4 PIAS4 PALB2 PALB2 RFC5 RFC5 BRIP1 BRIP1 TDRD3 TDRD3 TOPBP1 TOPBP1 NSD2 NSD2 ENSFDAP00000001970 ENSFDAP00000001970 RAD51D RAD51D ENSFDAP00000002085 ENSFDAP00000002085 DNA2 DNA2 ENSFDAP00000002920 ENSFDAP00000002920 H920_04859 H920_04859 BLM BLM CDK2 CDK2 ABRAXAS1 ABRAXAS1 ERCC4 ERCC4 Pold4 Pold4 ERCC1 ERCC1 EME1 EME1 RAD51B RAD51B LOC104872243 LOC104872243 RPS27A RPS27A H920_04706 H920_04706 TP53BP1 TP53BP1 LOC104870598 LOC104870598 H2BC21 H2BC21 BRCA2 BRCA2 CHEK1 CHEK1 CCNA2 CCNA2 LOC104861338 LOC104861338 POLH POLH LOC104861347 LOC104861347 LOC104853831 LOC104853831 SLF1 SLF1 LOC104856844 LOC104856844 H2BU1 H2BU1 LOC104870592 LOC104870592 RFC4 RFC4 XRCC3 XRCC3 H2BC12 H2BC12 ENSFDAP00000016636 ENSFDAP00000016636 CCNA1 CCNA1 ENSFDAP00000017292 ENSFDAP00000017292 ENSFDAP00000017776 ENSFDAP00000017776 Slx1a Slx1a BARD1 BARD1 POLE3 POLE3 LOC104870593 LOC104870593 Ubc Ubc EXD2 EXD2 KAT5 KAT5 CDK3 CDK3 POLD1 POLD1 Pold3 Pold3 RAD51 RAD51 RHNO1 RHNO1 RECQL4 RECQL4 RAD52 RAD52 LOC104870596 LOC104870596 BRCA1 BRCA1 Brcc3 Brcc3 Babam1 Babam1 RPA1 RPA1 ENSFDAP00000021366 ENSFDAP00000021366 MRE11 MRE11 POLE2 POLE2 H920_00078 H920_00078 ENSFDAP00000020651 ENSFDAP00000020651 LOC104861520 LOC104861520 HERC2 HERC2 WRN WRN LOC104861348 LOC104861348 RNF168 RNF168 RCBTB2 RCBTB2 H920_04415 H920_04415 SIRT6 SIRT6 BABAM2 BABAM2 LOC104871423 LOC104871423 ATM ATM H2AX H2AX ENSFDAP00000012092 ENSFDAP00000012092 ATR ATR LOC104861510 LOC104861510 CLSPN CLSPN ENSFDAP00000011665 ENSFDAP00000011665 LOC104861527 LOC104861527 LOC104861523 LOC104861523 LOC104861518 LOC104861518 H920_13460 H920_13460 RFC3 RFC3 RPA3 RPA3 LOC104861528 LOC104861528 RFC2 RFC2 RNF8 RNF8 LOC104861529 LOC104861529 LOC104861522 LOC104861522 GEN1 GEN1 EME2 EME2 RNF169 RNF169 H920_07462 H920_07462 RAD9B RAD9B RBBP8 RBBP8 POLE POLE MUS81 MUS81 TIMELESS TIMELESS RCBTB1 RCBTB1 TOP3A TOP3A RAD51C RAD51C RAD51AP1 RAD51AP1 LOC104861515 LOC104861515 PPP4R2 PPP4R2 RFC1 RFC1 UBE2I UBE2I ANKRD31 ANKRD31 POLD2 POLD2 UBA52 UBA52 LOC104861514 LOC104861514 RAD17 RAD17 UBE2V2 UBE2V2 MEIOB MEIOB RAD9A RAD9A RAD1 RAD1 XRCC2 XRCC2 RPA2 RPA2 POLK POLK SIRT7 SIRT7 HUS1 HUS1 PCNA PCNA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ATRIPATR-interacting protein. (720 aa)
NBNNibrin; Component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex is involved in double- strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, cell cycle checkpoint control and meiosis. (747 aa)
ENSFDAP00000006648annotation not available (129 aa)
PPP4CSerine/threonine-protein phosphatase. (307 aa)
RMI2RecQ mediated genome instability 2. (89 aa)
SpidrUncharacterized protein. (552 aa)
Rad50DNA repair protein RAD50. (1312 aa)
RMI1RecQ-mediated genome instability protein 1. (607 aa)
PIAS4Protein inhibitor of activated STAT 4. (386 aa)
PALB2Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (1185 aa)
RFC5Replication factor C subunit 5. (338 aa)
BRIP1Fanconi anemia group J protein. (1161 aa)
TDRD3Tudor domain-containing protein 3. (731 aa)
TOPBP1DNA topoisomerase 2-binding protein 1. (1526 aa)
NSD2Putative histone-lysine N-methyltransferase NSD2. (1366 aa)
ENSFDAP00000001970annotation not available (234 aa)
RAD51DDNA repair protein RAD51 like protein 4. (329 aa)
ENSFDAP00000002085annotation not available (112 aa)
DNA2DNA2-like helicase. (1059 aa)
ENSFDAP00000002920annotation not available (87 aa)
H920_04859Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (93 aa)
BLMBloom syndrome protein. (1348 aa)
CDK2Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily. (346 aa)
ABRAXAS1BRCA1-A complex subunit Abraxas. (359 aa)
ERCC4DNA repair endonuclease XPF. (917 aa)
Pold4DNA polymerase delta subunit 4. (107 aa)
ERCC1DNA excision repair protein ERCC-1. (298 aa)
EME1Crossover junction endonuclease EME1. (554 aa)
RAD51BDNA repair protein RAD51 like protein 2. (258 aa)
LOC104872243Histone H4. (103 aa)
RPS27AUbiquitin-40S ribosomal protein S27a. (156 aa)
H920_04706Histone H2B type 1; Belongs to the histone H2B family. (143 aa)
TP53BP1Tumor suppressor p53-binding protein 1. (1958 aa)
LOC104870598Histone H2B type 1-K-like. (126 aa)
H2BC21Histone H2B; Belongs to the histone H2B family. (137 aa)
BRCA2Breast cancer type 2 susceptibility protein. (3134 aa)
CHEK1Serine/threonine-protein kinase Chk1; Belongs to the protein kinase superfamily. (476 aa)
CCNA2Cyclin A2. (400 aa)
LOC104861338Histone H4. (103 aa)
POLHDNA polymerase eta. (709 aa)
LOC104861347Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC104853831Histone H2B; Belongs to the histone H2B family. (126 aa)
SLF1Ankyrin repeat domain-containing protein 32. (1057 aa)
LOC104856844Histone H2B; Belongs to the histone H2B family. (126 aa)
H2BU1Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC104870592Histone H2B; Belongs to the histone H2B family. (126 aa)
RFC4Replication factor C subunit 4. (333 aa)
XRCC3DNA repair protein XRCC3. (338 aa)
H2BC12H2B clustered histone 12. (126 aa)
ENSFDAP00000016636annotation not available (103 aa)
CCNA1Cyclin-A1; Belongs to the cyclin family. (421 aa)
ENSFDAP00000017292annotation not available (27 aa)
ENSFDAP00000017776annotation not available (72 aa)
Slx1aSulfotransferase; Belongs to the sulfotransferase 1 family. (63 aa)
BARD1BRCA1-associated RING domain protein 1. (672 aa)
POLE3DNA polymerase epsilon subunit 3. (147 aa)
LOC104870593Histone H2B type 1-N. (126 aa)
UbcPolyubiquitin-B. (235 aa)
EXD2Exonuclease 3'-5' domain-containing protein 2. (617 aa)
KAT5Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (513 aa)
CDK3Cyclin dependent kinase 3. (297 aa)
POLD1DNA polymerase delta 1, catalytic subunit. (933 aa)
Pold3DNA polymerase delta subunit 3. (465 aa)
RAD51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (339 aa)
RHNO1Uncharacterized protein. (235 aa)
RECQL4ATP-dependent DNA helicase Q4. (1197 aa)
RAD52DNA repair protein RAD52 like protein. (294 aa)
LOC104870596Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
BRCA1Breast cancer type 1 susceptibility protein homolog; E3 ubiquitin-protein ligase that specifically mediates the formation of 'Lys-6'-linked polyubiquitin chains and plays a central role in DNA repair by facilitating cellular responses to DNA damage. It is unclear whether it also mediates the formation of other types of polyubiquitin chains. The E3 ubiquitin-protein ligase activity is required for its tumor suppressor function. The BRCA1-BARD1 heterodimer coordinates a diverse range of cellular pathways such as DNA damage repair, ubiquitination and transcriptional regulation to maintain [...] (1737 aa)
Brcc3Lys-63-specific deubiquitinase BRCC36. (288 aa)
Babam1BRISC and BRCA1 A complex member 1. (293 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (615 aa)
ENSFDAP00000021366annotation not available (103 aa)
MRE11MRE11 homolog, double strand break repair nuclease. (708 aa)
POLE2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (527 aa)
H920_00078Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (159 aa)
ENSFDAP00000020651annotation not available (191 aa)
LOC104861520Histone H2B; Belongs to the histone H2B family. (125 aa)
HERC2E3 ubiquitin-protein ligase HERC2. (4835 aa)
WRNWerner syndrome ATP-dependent helicase. (1439 aa)
LOC104861348Histone H4. (103 aa)
RNF168E3 ubiquitin-protein ligase RNF168; E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recrui [...] (559 aa)
RCBTB2RCC1 and BTB domain-containing protein 2. (551 aa)
H920_04415BRCA1-A complex subunit RAP80. (415 aa)
SIRT6NAD-dependent deacetylase sirtuin-6. (282 aa)
BABAM2BRISC and BRCA1 A complex member 2. (409 aa)
LOC104871423Histone H2B subacrosomal variant; Belongs to the histone H2B family. (122 aa)
ATMSerine-protein kinase ATM; Serine/threonine protein kinase which activates checkpoint signaling upon double strand breaks (DSBs), apoptosis and genotoxic stresses such as ionizing ultraviolet A light (UVA), thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX at double strand breaks (DSBs), thereby regulating DNA damage response mechanism. Also plays a role in pre-B cell allelic exclusion, a process leading to expression of a single immunoglobulin heavy chain allele to enforce clonality and mo [...] (3061 aa)
H2AXHistone H2A; Belongs to the histone H2A family. (143 aa)
ENSFDAP00000012092annotation not available (103 aa)
ATRSerine/threonine-protein kinase ATR; Belongs to the PI3/PI4-kinase family. (2644 aa)
LOC104861510Histone H4. (103 aa)
CLSPNClaspin. (1338 aa)
ENSFDAP00000011665annotation not available (103 aa)
LOC104861527Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC104861523Histone H2B type 1. (126 aa)
LOC104861518Histone H2B; Belongs to the histone H2B family. (126 aa)
H920_13460TIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (74 aa)
RFC3Replication factor C subunit 3. (356 aa)
RPA3Replication protein A 14 kDa subunit. (122 aa)
LOC104861528Histone H2B; Belongs to the histone H2B family. (126 aa)
RFC2Replication factor C subunit 2. (316 aa)
RNF8E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] (449 aa)
LOC104861529Histone H4. (103 aa)
LOC104861522Histone H2B; Belongs to the histone H2B family. (126 aa)
GEN1GEN1 Holliday junction 5' flap endonuclease. (869 aa)
EME2Putative crossover junction endonuclease EME2. (371 aa)
RNF169RING finger protein 169. (609 aa)
H920_07462Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family. (142 aa)
RAD9BCell cycle checkpoint control protein; Belongs to the rad9 family. (404 aa)
RBBP8RB binding protein 8, endonuclease. (901 aa)
POLEDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2286 aa)
MUS81Crossover junction endonuclease MUS81. (539 aa)
TIMELESSProtein timeless like protein. (1207 aa)
RCBTB1RCC1 and BTB domain-containing protein 1. (531 aa)
TOP3ADNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (991 aa)
RAD51CDNA repair protein RAD51 like protein 3. (367 aa)
RAD51AP1RAD51-associated protein 1. (335 aa)
LOC104861515Histone H2B; Belongs to the histone H2B family. (126 aa)
PPP4R2Serine/threonine-protein phosphatase 4 regulatory subunit 2. (403 aa)
RFC1Replication factor C subunit 1. (1141 aa)
UBE2ISUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
ANKRD31Ankyrin repeat domain-containing protein 31. (1857 aa)
POLD2DNA polymerase delta subunit 2. (469 aa)
UBA52KxDL motif containing 1. (232 aa)
LOC104861514Histone H4. (103 aa)
RAD17Cell cycle checkpoint protein RAD17. (714 aa)
UBE2V2Ubiquitin-conjugating enzyme E2 variant 2. (145 aa)
MEIOBCDC24_OB3 domain-containing protein. (471 aa)
RAD9ACell cycle checkpoint control protein; Belongs to the rad9 family. (411 aa)
RAD1Cell cycle checkpoint protein RAD1. (279 aa)
XRCC2Actin related protein 3B. (231 aa)
RPA2Replication protein A 32 kDa subunit. (270 aa)
POLKDNA polymerase kappa. (862 aa)
SIRT7NAD-dependent deacetylase sirtuin-7. (400 aa)
HUS1Checkpoint protein; Belongs to the HUS1 family. (280 aa)
PCNAProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (261 aa)
Your Current Organism:
Fukomys damarensis
NCBI taxonomy Id: 885580
Other names: Coetomys damarensis, Cryptomys damarensis, Damara mole rat, Damara mole-rat, F. damarensis
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