STRINGSTRING
COPS3 COPS3 ERCC2 ERCC2 PPIE PPIE H920_00253 H920_00253 COPS6 COPS6 USP7 USP7 TCEANC TCEANC ERCC6 ERCC6 NRDE2 NRDE2 GTF2H5 GTF2H5 PPP1R42 PPP1R42 Isy1 Isy1 ENSFDAP00000003006 ENSFDAP00000003006 ENSFDAP00000002920 ENSFDAP00000002920 TCEA2 TCEA2 ERCC3 ERCC3 LOC104858675 LOC104858675 Tcea3 Tcea3 POLR2I POLR2I UVSSA UVSSA LOC104871412 LOC104871412 XPA XPA COPS8 COPS8 GTF2H3 GTF2H3 MNAT1 MNAT1 Polr2j Polr2j POLR2G POLR2G POLR2D POLR2D UBA52 UBA52 COPS7B COPS7B CUL4A CUL4A COPS7A COPS7A TCEANC2 TCEANC2 EP300 EP300 RBX1 RBX1 POLR2L POLR2L POLR2C POLR2C GPS1 GPS1 Polr2a Polr2a H920_04535 H920_04535 CCNH CCNH TCEA1 TCEA1 COPS4 COPS4 POLR2E POLR2E COPS5 COPS5 XAB2 XAB2 POLR2H POLR2H PRPF19 PRPF19 Ubc Ubc POLR2F POLR2F POLR2B POLR2B ERCC8 ERCC8 Hmgn2 Hmgn2 DDB1 DDB1 COPS2 COPS2 CDK7 CDK7 H920_05253 H920_05253 GTF2H1 GTF2H1 RPS27A RPS27A H920_16073 H920_16073 POLR2K POLR2K AQR AQR GTF2H4 GTF2H4 ENSFDAP00000011192 ENSFDAP00000011192 CUL4B CUL4B
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
COPS3COP9 signalosome complex subunit 3. (423 aa)
ERCC2TFIIH basal transcription factor complex helicase XPD subunit. (760 aa)
PPIEPeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
H920_00253High mobility group nucleosome-binding domain-containing protein 4. (100 aa)
COPS6COP9 signalosome complex subunit 6. (347 aa)
USP7Ubiquitin carboxyl-terminal hydrolase 7; Belongs to the peptidase C19 family. (1086 aa)
TCEANCTranscription elongation factor A N-terminal and central domain-containing protein. (295 aa)
ERCC6DNA excision repair protein ERCC-6. (1446 aa)
NRDE2Uncharacterized protein. (1166 aa)
GTF2H5General transcription factor IIH subunit 5. (71 aa)
PPP1R42Protein phosphatase 1 regulatory subunit 42. (302 aa)
Isy1Pre-mRNA-splicing factor ISY1 like protein. (294 aa)
ENSFDAP00000003006annotation not available (85 aa)
ENSFDAP00000002920annotation not available (87 aa)
TCEA2Transcription elongation factor A protein 2. (278 aa)
ERCC3TFIIH basal transcription factor complex helicase XPB subunit. (781 aa)
LOC104858675Uroplakin-3b-like protein. (252 aa)
Tcea3Zinc finger protein 436. (421 aa)
POLR2IDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
UVSSAUncharacterized protein. (678 aa)
LOC104871412General transcription factor IIH subunit 2. (395 aa)
XPADNA repair protein complementing XP-A cells. (262 aa)
COPS8COP9 signalosome complex subunit 8. (209 aa)
GTF2H3General transcription factor IIH subunit 3. (305 aa)
MNAT1CDK-activating kinase assembly factor MAT1. (309 aa)
Polr2jDNA-directed RNA polymerase II subunit RPB11-a. (117 aa)
POLR2GRNA polymerase II subunit G. (172 aa)
POLR2DDNA-directed RNA polymerase II subunit RPB4. (142 aa)
UBA52KxDL motif containing 1. (232 aa)
COPS7BCOP9 signalosome complex subunit 7b. (264 aa)
CUL4ACullin 4A. (594 aa)
COPS7ACOP9 signalosome complex subunit 7a. (277 aa)
TCEANC2Transcription elongation factor A N-terminal and central domain-containing protein 2. (208 aa)
EP300Histone acetyltransferase p300. (2430 aa)
RBX1E3 ubiquitin-protein ligase RBX1. (108 aa)
POLR2LDNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
POLR2CDNA-directed RNA polymerase II subunit RPB3. (266 aa)
GPS1COP9 signalosome complex subunit 1. (490 aa)
Polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1970 aa)
H920_04535High mobility group nucleosome-binding domain-containing protein 4. (97 aa)
CCNHCyclin-H; Belongs to the cyclin family. (323 aa)
TCEA1Transcription elongation factor A1. (280 aa)
COPS4COP9 signalosome complex subunit 4. (406 aa)
POLR2EDNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
COPS5COP9 signalosome complex subunit 5. (334 aa)
XAB2XPA binding protein 2. (843 aa)
POLR2HRNA polymerase II subunit H. (150 aa)
PRPF19Pre-mRNA-processing factor 19. (440 aa)
UbcPolyubiquitin-B. (235 aa)
POLR2FDNA-directed RNA polymerases I, II, and III subunit RPABC2. (127 aa)
POLR2BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1178 aa)
ERCC8DNA excision repair protein ERCC-8. (395 aa)
Hmgn2High mobility group nucleosomal binding domain 2. (96 aa)
DDB1DNA damage-binding protein 1. (1140 aa)
COPS2COP9 signalosome complex subunit 2. (443 aa)
CDK7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (346 aa)
H920_05253Transcription elongation factor A protein 3. (345 aa)
GTF2H1General transcription factor IIH subunit 1. (548 aa)
RPS27AUbiquitin-40S ribosomal protein S27a. (156 aa)
H920_16073Non-histone chromosomal protein HMG-14. (100 aa)
POLR2KDNA-directed RNA polymerases I, II, and III subunit RPABC4. (58 aa)
AQRRNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing. (1493 aa)
GTF2H4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (406 aa)
ENSFDAP00000011192annotation not available (51 aa)
CUL4BCullin-4B; Belongs to the cullin family. (888 aa)
Your Current Organism:
Fukomys damarensis
NCBI taxonomy Id: 885580
Other names: Coetomys damarensis, Cryptomys damarensis, Damara mole rat, Damara mole-rat, F. damarensis
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