25 items (Fukomys damarensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RNF139	E3 ubiquitin-protein ligase RNF139. (604 aa)
	EDEM1	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (599 aa)
	TRIM54	Tripartite motif-containing protein 54. (335 aa)
	UBA52	KxDL motif containing 1. (232 aa)
	Trim59	Tripartite motif-containing protein 59. (396 aa)
	RNF103	E3 ubiquitin-protein ligase RNF103. (683 aa)
	Ubc	Polyubiquitin-B. (235 aa)
	MARCHF6	E3 ubiquitin-protein ligase MARCH6. (903 aa)
	MARCHF2	E3 ubiquitin-protein ligase MARCH2. (246 aa)
	MARCHF3	E3 ubiquitin-protein ligase MARCH3. (253 aa)
	TRIM13	E3 ubiquitin-protein ligase TRIM13. (407 aa)
	ENSFDAP00000002920	annotation not available (87 aa)
	Marchf8	E3 ubiquitin-protein ligase MARCH8. (289 aa)
	EDEM3	ER degradation enhancing alpha-mannosidase like protein 3. (942 aa)
	MARCHF7	E3 ubiquitin-protein ligase MARCH7. (688 aa)
	TRIM55	Tripartite motif-containing protein 55. (547 aa)
	MAN1B1	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (663 aa)
	UGGT2	UDP-glucose:glycoprotein glucosyltransferase 2. (1458 aa)
	MARCHF1	E3 ubiquitin-protein ligase MARCH1. (289 aa)
	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1. (1544 aa)
	EDEM2	ER degradation enhancing alpha-mannosidase like protein 2. (578 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (156 aa)
	ENSFDAP00000014313	annotation not available (236 aa)
	MARCHF10	Membrane associated ring-CH-type finger 10. (769 aa)
	MARCHF9	E3 ubiquitin-protein ligase MARCH9. (286 aa)

Your Current Organism:

Fukomys damarensis

NCBI taxonomy Id: 885580
Other names: Coetomys damarensis, Cryptomys damarensis, Damara mole rat, Damara mole-rat, F. damarensis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDEM1	EDEM2	ENSFDAP00000017472	ENSFDAP00000011461	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	ER degradation enhancing alpha-mannosidase like protein 2.	0.904
EDEM1	EDEM3	ENSFDAP00000017472	ENSFDAP00000004670	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	ER degradation enhancing alpha-mannosidase like protein 3.	0.940
EDEM1	UGGT1	ENSFDAP00000017472	ENSFDAP00000011297	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	UDP-glucose:glycoprotein glucosyltransferase 1.	0.556
EDEM1	UGGT2	ENSFDAP00000017472	ENSFDAP00000005880	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	UDP-glucose:glycoprotein glucosyltransferase 2.	0.509
EDEM2	EDEM1	ENSFDAP00000011461	ENSFDAP00000017472	ER degradation enhancing alpha-mannosidase like protein 2.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.904
EDEM2	EDEM3	ENSFDAP00000011461	ENSFDAP00000004670	ER degradation enhancing alpha-mannosidase like protein 2.	ER degradation enhancing alpha-mannosidase like protein 3.	0.942
EDEM2	UGGT1	ENSFDAP00000011461	ENSFDAP00000011297	ER degradation enhancing alpha-mannosidase like protein 2.	UDP-glucose:glycoprotein glucosyltransferase 1.	0.538
EDEM2	UGGT2	ENSFDAP00000011461	ENSFDAP00000005880	ER degradation enhancing alpha-mannosidase like protein 2.	UDP-glucose:glycoprotein glucosyltransferase 2.	0.538
EDEM3	EDEM1	ENSFDAP00000004670	ENSFDAP00000017472	ER degradation enhancing alpha-mannosidase like protein 3.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.940
EDEM3	EDEM2	ENSFDAP00000004670	ENSFDAP00000011461	ER degradation enhancing alpha-mannosidase like protein 3.	ER degradation enhancing alpha-mannosidase like protein 2.	0.942
EDEM3	UGGT1	ENSFDAP00000004670	ENSFDAP00000011297	ER degradation enhancing alpha-mannosidase like protein 3.	UDP-glucose:glycoprotein glucosyltransferase 1.	0.532
EDEM3	UGGT2	ENSFDAP00000004670	ENSFDAP00000005880	ER degradation enhancing alpha-mannosidase like protein 3.	UDP-glucose:glycoprotein glucosyltransferase 2.	0.518
ENSFDAP00000002920	RNF103	ENSFDAP00000002920	ENSFDAP00000018695	annotation not available	E3 ubiquitin-protein ligase RNF103.	0.667
ENSFDAP00000002920	RNF139	ENSFDAP00000002920	ENSFDAP00000013015	annotation not available	E3 ubiquitin-protein ligase RNF139.	0.692
ENSFDAP00000002920	RPS27A	ENSFDAP00000002920	ENSFDAP00000014104	annotation not available	Ubiquitin-40S ribosomal protein S27a.	0.998
ENSFDAP00000002920	TRIM13	ENSFDAP00000002920	ENSFDAP00000001204	annotation not available	E3 ubiquitin-protein ligase TRIM13.	0.520
ENSFDAP00000002920	TRIM54	ENSFDAP00000002920	ENSFDAP00000022100	annotation not available	Tripartite motif-containing protein 54.	0.520
ENSFDAP00000002920	TRIM55	ENSFDAP00000002920	ENSFDAP00000005554	annotation not available	Tripartite motif-containing protein 55.	0.520
ENSFDAP00000002920	Trim59	ENSFDAP00000002920	ENSFDAP00000021616	annotation not available	Tripartite motif-containing protein 59.	0.520
ENSFDAP00000002920	UBA52	ENSFDAP00000002920	ENSFDAP00000022032	annotation not available	KxDL motif containing 1.	0.826