31 items (Fukomys damarensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TYK2	Tyrosine-protein kinase. (981 aa)
	PTPN11	Tyrosine-protein phosphatase non-receptor type 11. (600 aa)
	ENSFDAP00000001171	annotation not available (81 aa)
	Rnf7	Ring finger protein 7. (99 aa)
	ENSFDAP00000002920	annotation not available (87 aa)
	SOCS1	Suppressor of cytokine signaling 1. (193 aa)
	ENSFDAP00000003729	annotation not available (135 aa)
	GRB2	Growth factor receptor-bound protein 2. (217 aa)
	GAB2	GRB2-associated-binding protein 2. (636 aa)
	ENSFDAP00000005475	annotation not available (139 aa)
	ENSFDAP00000007247	annotation not available (119 aa)
	ENSFDAP00000007264	annotation not available (98 aa)
	LOC104856727	Ubiquitin-conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
	ENSFDAP00000010206	annotation not available (133 aa)
	SYK	Tyrosine-protein kinase. (629 aa)
	CSF3R	Uncharacterized protein. (842 aa)
	CSF3	Colony stimulating factor 3. (204 aa)
	SOCS3	Suppressor of cytokine signaling 3. (227 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (156 aa)
	CUL5	Cullin-5; Belongs to the cullin family. (785 aa)
	ELOC	Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family. (112 aa)
	JAK2	Tyrosine-protein kinase. (1132 aa)
	JAK1	Tyrosine-protein kinase. (1153 aa)
	Ubc	Polyubiquitin-B. (235 aa)
	Elob	Elongin B. (126 aa)
	LOC104851043	RING-box protein 2. (400 aa)
	SHC1	SHC-transforming protein 1. (583 aa)
	LYN	Tyrosine-protein kinase. (512 aa)
	UBE2D2	Ubiquitin-conjugating enzyme E2 D4; Belongs to the ubiquitin-conjugating enzyme family. (140 aa)
	UBA52	KxDL motif containing 1. (232 aa)
	UBE2D1	Ubiquitin-conjugating enzyme E2 D1; Belongs to the ubiquitin-conjugating enzyme family. (140 aa)

Your Current Organism:

Fukomys damarensis

NCBI taxonomy Id: 885580
Other names: Coetomys damarensis, Cryptomys damarensis, Damara mole rat, Damara mole-rat, F. damarensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSF3	CSF3R	ENSFDAP00000013390	ENSFDAP00000013126	Colony stimulating factor 3.	Uncharacterized protein.	0.994
CSF3	ENSFDAP00000002920	ENSFDAP00000013390	ENSFDAP00000002920	Colony stimulating factor 3.	annotation not available	0.852
CSF3	Elob	ENSFDAP00000013390	ENSFDAP00000019885	Colony stimulating factor 3.	Elongin B.	0.614
CSF3	JAK1	ENSFDAP00000013390	ENSFDAP00000018314	Colony stimulating factor 3.	Tyrosine-protein kinase.	0.871
CSF3	JAK2	ENSFDAP00000013390	ENSFDAP00000018107	Colony stimulating factor 3.	Tyrosine-protein kinase.	0.931
CSF3	LYN	ENSFDAP00000013390	ENSFDAP00000021246	Colony stimulating factor 3.	Tyrosine-protein kinase.	0.611
CSF3	PTPN11	ENSFDAP00000013390	ENSFDAP00000000436	Colony stimulating factor 3.	Tyrosine-protein phosphatase non-receptor type 11.	0.623
CSF3	RPS27A	ENSFDAP00000013390	ENSFDAP00000014104	Colony stimulating factor 3.	Ubiquitin-40S ribosomal protein S27a.	0.964
CSF3	SOCS1	ENSFDAP00000013390	ENSFDAP00000003325	Colony stimulating factor 3.	Suppressor of cytokine signaling 1.	0.586
CSF3	SOCS3	ENSFDAP00000013390	ENSFDAP00000013713	Colony stimulating factor 3.	Suppressor of cytokine signaling 3.	0.678
CSF3	SYK	ENSFDAP00000013390	ENSFDAP00000012634	Colony stimulating factor 3.	Tyrosine-protein kinase.	0.563
CSF3	TYK2	ENSFDAP00000013390	ENSFDAP00000004418	Colony stimulating factor 3.	Tyrosine-protein kinase.	0.783
CSF3	UBA52	ENSFDAP00000013390	ENSFDAP00000022032	Colony stimulating factor 3.	KxDL motif containing 1.	0.852
CSF3	UBE2D1	ENSFDAP00000013390	ENSFDAP00000022664	Colony stimulating factor 3.	Ubiquitin-conjugating enzyme E2 D1; Belongs to the ubiquitin-conjugating enzyme family.	0.544
CSF3	Ubc	ENSFDAP00000013390	ENSFDAP00000018389	Colony stimulating factor 3.	Polyubiquitin-B.	0.802
CSF3R	CSF3	ENSFDAP00000013126	ENSFDAP00000013390	Uncharacterized protein.	Colony stimulating factor 3.	0.994
CSF3R	CUL5	ENSFDAP00000013126	ENSFDAP00000016223	Uncharacterized protein.	Cullin-5; Belongs to the cullin family.	0.616
CSF3R	ELOC	ENSFDAP00000013126	ENSFDAP00000016448	Uncharacterized protein.	Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.	0.543
CSF3R	ENSFDAP00000001171	ENSFDAP00000013126	ENSFDAP00000001171	Uncharacterized protein.	annotation not available	0.543
CSF3R	ENSFDAP00000002920	ENSFDAP00000013126	ENSFDAP00000002920	Uncharacterized protein.	annotation not available	0.649