26 items (Fukomys damarensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Chuk	Inhibitor of nuclear factor kappa-B kinase subunit alpha. (744 aa)
	Ubc	Polyubiquitin-B. (235 aa)
	Tonsl	Tonsoku-like protein. (64 aa)
	UBA52	KxDL motif containing 1. (232 aa)
	IKBKG	NF-kappa-B essential modulator. (417 aa)
	LRRC14	Leucine-rich repeat-containing protein 14. (493 aa)
	ENSFDAP00000018414	annotation not available (666 aa)
	Ikbip	IKBKB interacting protein. (339 aa)
	LRRC74B	Leucine rich repeat containing 74B. (378 aa)
	KHNYN	Protein KHNYN. (670 aa)
	USP14	Ubiquitin specific peptidase 14. (440 aa)
	LRRC45	Leucine-rich repeat-containing protein 45. (662 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (156 aa)
	TRAF6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (543 aa)
	N4BP1	NEDD4-binding protein 1. (825 aa)
	CASP8	Caspase-8; Belongs to the peptidase C14A family. (462 aa)
	Usp18	Ubl carboxyl-terminal hydrolase 18; Belongs to the peptidase C19 family. (60 aa)
	LRRC34	Leucine-rich repeat-containing protein 34. (402 aa)
	TRAF2	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (501 aa)
	NLRX1	NLR family member X1. (972 aa)
	IKBKB	Inhibitor of nuclear factor kappa-B kinase subunit beta. (756 aa)
	ENSFDAP00000002920	annotation not available (87 aa)
	LRRC71	Leucine-rich repeat-containing protein 71. (462 aa)
	LRRC74A	Uncharacterized protein. (476 aa)
	NLRC5	Protein NLRC5. (1784 aa)
	NLRP6	NLR family pyrin domain containing 6. (808 aa)

Your Current Organism:

Fukomys damarensis

NCBI taxonomy Id: 885580
Other names: Coetomys damarensis, Cryptomys damarensis, Damara mole rat, Damara mole-rat, F. damarensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CASP8	Chuk	ENSFDAP00000016683	ENSFDAP00000016676	Caspase-8; Belongs to the peptidase C14A family.	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	0.478
CASP8	ENSFDAP00000018414	ENSFDAP00000016683	ENSFDAP00000018414	Caspase-8; Belongs to the peptidase C14A family.	annotation not available	0.478
CASP8	IKBKB	ENSFDAP00000016683	ENSFDAP00000002634	Caspase-8; Belongs to the peptidase C14A family.	Inhibitor of nuclear factor kappa-B kinase subunit beta.	0.453
CASP8	IKBKG	ENSFDAP00000016683	ENSFDAP00000020434	Caspase-8; Belongs to the peptidase C14A family.	NF-kappa-B essential modulator.	0.834
CASP8	KHNYN	ENSFDAP00000016683	ENSFDAP00000007223	Caspase-8; Belongs to the peptidase C14A family.	Protein KHNYN.	0.676
CASP8	N4BP1	ENSFDAP00000016683	ENSFDAP00000016674	Caspase-8; Belongs to the peptidase C14A family.	NEDD4-binding protein 1.	0.747
CASP8	NLRC5	ENSFDAP00000016683	ENSFDAP00000004910	Caspase-8; Belongs to the peptidase C14A family.	Protein NLRC5.	0.492
CASP8	RPS27A	ENSFDAP00000016683	ENSFDAP00000014104	Caspase-8; Belongs to the peptidase C14A family.	Ubiquitin-40S ribosomal protein S27a.	0.483
CASP8	TRAF2	ENSFDAP00000016683	ENSFDAP00000000664	Caspase-8; Belongs to the peptidase C14A family.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.953
CASP8	TRAF6	ENSFDAP00000016683	ENSFDAP00000015339	Caspase-8; Belongs to the peptidase C14A family.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.852
CASP8	Tonsl	ENSFDAP00000016683	ENSFDAP00000022451	Caspase-8; Belongs to the peptidase C14A family.	Tonsoku-like protein.	0.634
CASP8	Ubc	ENSFDAP00000016683	ENSFDAP00000018389	Caspase-8; Belongs to the peptidase C14A family.	Polyubiquitin-B.	0.440
Chuk	CASP8	ENSFDAP00000016676	ENSFDAP00000016683	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	Caspase-8; Belongs to the peptidase C14A family.	0.478
Chuk	ENSFDAP00000002920	ENSFDAP00000016676	ENSFDAP00000002920	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	annotation not available	0.666
Chuk	IKBKB	ENSFDAP00000016676	ENSFDAP00000002634	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	Inhibitor of nuclear factor kappa-B kinase subunit beta.	0.993
Chuk	IKBKG	ENSFDAP00000016676	ENSFDAP00000020434	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	NF-kappa-B essential modulator.	0.989
Chuk	LRRC14	ENSFDAP00000016676	ENSFDAP00000019902	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	Leucine-rich repeat-containing protein 14.	0.713
Chuk	LRRC34	ENSFDAP00000016676	ENSFDAP00000000569	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	Leucine-rich repeat-containing protein 34.	0.421
Chuk	LRRC45	ENSFDAP00000016676	ENSFDAP00000012333	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	Leucine-rich repeat-containing protein 45.	0.421
Chuk	LRRC71	ENSFDAP00000016676	ENSFDAP00000003107	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	Leucine-rich repeat-containing protein 71.	0.421