(28 nodes) Mixed, incl. Porin activity, and Lysin motif network (Chryseobacterium sp. BLS98)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KMQ63350.1	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (717 aa)
	KMQ63435.1	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (430 aa)
	KMQ63489.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	KMQ63490.1	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology. (520 aa)
	KMQ63544.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (112 aa)
	KMQ63652.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (647 aa)
	KMQ63654.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (646 aa)
	KMQ63823.1	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)
	KMQ63832.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
	KMQ64058.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)
	KMQ61702.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (589 aa)
	KMQ61703.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (987 aa)
	KMQ62135.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)
	KMQ62287.1	Secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (116 aa)
	KMQ62290.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
	KMQ62485.1	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)
	KMQ62486.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa)
	KMQ62866.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	KMQ60500.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	KMQ61188.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (523 aa)
	KMQ61205.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)
	KMQ60880.1	prolyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
	KMQ60881.1	Hemin receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (467 aa)
	KMQ60918.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (422 aa)
	KMQ61006.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)
	KMQ61009.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (100 aa)
	KMQ58940.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
	KMQ59029.1	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)

Your Current Organism:

Chryseobacterium sp. BLS98

NCBI taxonomy Id: 885586
Other names: C. sp. BLS98

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KMQ58940.1	KMQ59029.1	ACM40_18460	ACM40_18945	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
KMQ58940.1	KMQ60500.1	ACM40_18460	ACM40_11995	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
KMQ58940.1	KMQ60880.1	ACM40_18460	ACM40_14280	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	prolyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.537
KMQ58940.1	KMQ60881.1	ACM40_18460	ACM40_14285	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemin receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.645
KMQ58940.1	KMQ60918.1	ACM40_18460	ACM40_14485	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.758
KMQ58940.1	KMQ61006.1	ACM40_18460	ACM40_14965	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
KMQ58940.1	KMQ61009.1	ACM40_18460	ACM40_14980	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
KMQ58940.1	KMQ61188.1	ACM40_18460	ACM40_12040	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
KMQ58940.1	KMQ61205.1	ACM40_18460	ACM40_13135	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
KMQ58940.1	KMQ61702.1	ACM40_18460	ACM40_05030	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
KMQ58940.1	KMQ62135.1	ACM40_18460	ACM40_07435	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
KMQ58940.1	KMQ62287.1	ACM40_18460	ACM40_08280	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.755
KMQ58940.1	KMQ62290.1	ACM40_18460	ACM40_08295	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
KMQ58940.1	KMQ62485.1	ACM40_18460	ACM40_09375	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.757
KMQ58940.1	KMQ62486.1	ACM40_18460	ACM40_09380	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
KMQ58940.1	KMQ62866.1	ACM40_18460	ACM40_11010	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.752
KMQ58940.1	KMQ63350.1	ACM40_18460	ACM40_00570	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621
KMQ58940.1	KMQ63435.1	ACM40_18460	ACM40_01105	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
KMQ58940.1	KMQ63489.1	ACM40_18460	ACM40_01415	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676
KMQ58940.1	KMQ63490.1	ACM40_18460	ACM40_01420	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438