STRINGSTRING
AFG36504.1 AFG36504.1 AFG36505.1 AFG36505.1 AFG36507.1 AFG36507.1 cas1 cas1 AFG36509.1 AFG36509.1 AFG36510.1 AFG36510.1 AFG36511.1 AFG36511.1 AFG36512.1 AFG36512.1 AFG36513.1 AFG36513.1 AFG37345.1 AFG37345.1 AFG37794.1 AFG37794.1 AFG38448.1 AFG38448.1 AFG38544.1 AFG38544.1 AFG38681.1 AFG38681.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AFG36504.1Hypothetical protein. (111 aa)
AFG36505.1Hypothetical protein. (230 aa)
AFG36507.1Putative transcriptional regulator; PFAM: HTH domain. (340 aa)
cas1CRISPR-associated endonuclease Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (319 aa)
AFG36509.1TIGRFAM: CRISPR-associated helicase Cas3, subtype I-F/YPEST. (1128 aa)
AFG36510.1PFAM: CRISPR-associated protein (Cas_Csy1); TIGRFAM: CRISPR type I-F/YPEST-associated protein Csy1. (417 aa)
AFG36511.1PFAM: CRISPR-associated protein (Cas_Csy2); TIGRFAM: CRISPR type I-F/YPEST-associated protein Csy2. (295 aa)
AFG36512.1PFAM: CRISPR-associated protein (Cas_Csy3); TIGRFAM: CRISPR type I-F/YPEST-associated protein Csy3. (343 aa)
AFG36513.1PFAM: CRISPR-associated protein (Cas_Csy4); TIGRFAM: CRISPR-associated protein Cas6/Csy4, subtype I-F/YPEST. (193 aa)
AFG37345.1Hypothetical protein. (424 aa)
AFG37794.1PFAM: ParB-like nuclease domain. (418 aa)
AFG38448.1Oxygen-sensitive ribonucleoside-triphosphate reductase; PFAM: ATP cone domain; Ribonucleotide reductase, barrel domain. (821 aa)
AFG38544.1Hypothetical protein. (306 aa)
AFG38681.1PFAM: Cyclic nucleotide-binding domain. (690 aa)
Your Current Organism:
Spirochaeta africana
NCBI taxonomy Id: 889378
Other names: S. africana DSM 8902, Spirochaeta africana DSM 8902, Spirochaeta africana Z-7692, Spirochaeta africana str. DSM 8902, Spirochaeta africana strain DSM 8902
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