12 items (Columba livia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A306_00014013	Mitogen-activated protein kinase. (182 aa)
	DUSP3	Dual specificity protein phosphatase; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (184 aa)
	PTPN7	Protein tyrosine phosphatase, non-receptor type 7. (363 aa)
	MAPK1	Mitogen-activated protein kinase 1, transcript variant X2. (263 aa)
	MAPKAPK5	Mitogen-activated protein kinase-activated protein kinase 5, transcript variant X1. (407 aa)
	MAPK12	Mitogen-activated protein kinase. (352 aa)
	PTPN5	Protein tyrosine phosphatase, non-receptor type 5 (Striatum-enriched). (525 aa)
	ATF2	Activating transcription factor 2, transcript variant X1. (487 aa)
	RPS6KA5	Ribosomal protein S6 kinase, 90kDa, polypeptide 5. (765 aa)
	PTPRR	Protein tyrosine phosphatase, receptor type, R. (555 aa)
	A306_00014012	Mitogen-activated protein kinase. (365 aa)
	A306_00014015	Mitogen-activated protein kinase. (167 aa)

Your Current Organism:

Columba livia

NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A306_00014012	A306_00014013	R7VV07	A0A2I0LKK4	Mitogen-activated protein kinase.	Mitogen-activated protein kinase.	0.457
A306_00014012	A306_00014015	R7VV07	R7VXR9	Mitogen-activated protein kinase.	Mitogen-activated protein kinase.	0.462
A306_00014012	ATF2	R7VV07	A0A2I0MIJ4	Mitogen-activated protein kinase.	Activating transcription factor 2, transcript variant X1.	0.963
A306_00014012	DUSP3	R7VV07	A0A2I0LNC1	Mitogen-activated protein kinase.	Dual specificity protein phosphatase; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.933
A306_00014012	MAPK1	R7VV07	A0A2I0M868	Mitogen-activated protein kinase.	Mitogen-activated protein kinase 1, transcript variant X2.	0.939
A306_00014012	MAPK12	R7VV07	A0A2I0MH92	Mitogen-activated protein kinase.	Mitogen-activated protein kinase.	0.616
A306_00014012	MAPKAPK5	R7VV07	A0A2I0M8N6	Mitogen-activated protein kinase.	Mitogen-activated protein kinase-activated protein kinase 5, transcript variant X1.	0.960
A306_00014012	PTPN5	R7VV07	A0A2I0MHQ2	Mitogen-activated protein kinase.	Protein tyrosine phosphatase, non-receptor type 5 (Striatum-enriched).	0.934
A306_00014012	PTPN7	R7VV07	A0A2I0LNQ7	Mitogen-activated protein kinase.	Protein tyrosine phosphatase, non-receptor type 7.	0.953
A306_00014012	PTPRR	R7VV07	R7VR12	Mitogen-activated protein kinase.	Protein tyrosine phosphatase, receptor type, R.	0.953
A306_00014012	RPS6KA5	R7VV07	A0A2I0MQ34	Mitogen-activated protein kinase.	Ribosomal protein S6 kinase, 90kDa, polypeptide 5.	0.950
A306_00014013	A306_00014012	A0A2I0LKK4	R7VV07	Mitogen-activated protein kinase.	Mitogen-activated protein kinase.	0.457
A306_00014013	A306_00014015	A0A2I0LKK4	R7VXR9	Mitogen-activated protein kinase.	Mitogen-activated protein kinase.	0.900
A306_00014013	ATF2	A0A2I0LKK4	A0A2I0MIJ4	Mitogen-activated protein kinase.	Activating transcription factor 2, transcript variant X1.	0.964
A306_00014013	DUSP3	A0A2I0LKK4	A0A2I0LNC1	Mitogen-activated protein kinase.	Dual specificity protein phosphatase; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.933
A306_00014013	MAPK1	A0A2I0LKK4	A0A2I0M868	Mitogen-activated protein kinase.	Mitogen-activated protein kinase 1, transcript variant X2.	0.943
A306_00014013	MAPK12	A0A2I0LKK4	A0A2I0MH92	Mitogen-activated protein kinase.	Mitogen-activated protein kinase.	0.469
A306_00014013	MAPKAPK5	A0A2I0LKK4	A0A2I0M8N6	Mitogen-activated protein kinase.	Mitogen-activated protein kinase-activated protein kinase 5, transcript variant X1.	0.969
A306_00014013	PTPN5	A0A2I0LKK4	A0A2I0MHQ2	Mitogen-activated protein kinase.	Protein tyrosine phosphatase, non-receptor type 5 (Striatum-enriched).	0.934
A306_00014013	PTPN7	A0A2I0LKK4	A0A2I0LNQ7	Mitogen-activated protein kinase.	Protein tyrosine phosphatase, non-receptor type 7.	0.953