STRINGSTRING
SNRPD2 SNRPD2 A306_00015272 A306_00015272 A306_00015217 A306_00015217 XAB2 XAB2 PRPF19 PRPF19 MFAP1 MFAP1 A306_00015341 A306_00015341 SF3A1 SF3A1 USP39 USP39 DQX1 DQX1 SNRNP200 SNRNP200 PPRC1 PPRC1 CTNNBL1 CTNNBL1 PPIE PPIE DDX23 DDX23 PRPF3 PRPF3 SF3B4 SF3B4 LSM7 LSM7 PPIH PPIH ZMAT5 ZMAT5 SHD SHD CCDC94 CCDC94 SNRPE SNRPE CCDC183 CCDC183 CWC25 CWC25 DDX42 DDX42 A306_00011895 A306_00011895 DHX8 DHX8 LSM4 LSM4 SYF2 SYF2 BUD13 BUD13 SF3A2 SF3A2 IK IK ZMAT2 ZMAT2 SNRPD1 SNRPD1 SNIP1 SNIP1 SF3A3 SF3A3 LSM10 LSM10 SNRNP40 SNRNP40 TXNL4A TXNL4A PRPF4 PRPF4 TCERG1 TCERG1 SNRPG SNRPG WDR70 WDR70 ISY1 ISY1 SNRPF SNRPF WDR53 WDR53 LSM3 LSM3 CWC15 CWC15 SF3B1 SF3B1 PLRG1 PLRG1 SNRPD3 SNRPD3 LSM5 LSM5 BCAS2 BCAS2 PPIL1 PPIL1 SF3B3 SF3B3 BUD31 BUD31 CWC27 CWC27 PRPF8 PRPF8 SRRM3 SRRM3 DHX35 DHX35 DHX38 DHX38 RBM41 RBM41 SMU1 SMU1 PRPF6 PRPF6 DNAJC5 DNAJC5 SART3 SART3 TFIP11 TFIP11 SNRNP35 SNRNP35 CRNKL1 CRNKL1 SLU7 SLU7 RBM22 RBM22 DDX46 DDX46 DAW1 DAW1 PRPF38A PRPF38A CWF19L2 CWF19L2 SNRPA1 SNRPA1 RNPC3 RNPC3 LSM6 LSM6 PRPF18 PRPF18 A306_00003989 A306_00003989 A306_00003988 A306_00003988 LSM8 LSM8 PHF5A PHF5A DHX15 DHX15 SNW1 SNW1 AQR AQR WDR25 WDR25 WBP4 WBP4 TXNL4B TXNL4B CDC5L CDC5L SF3B6 SF3B6 SF3B5 SF3B5 CDC40 CDC40 SNRPB2 SNRPB2 EFTUD2 EFTUD2 WBP11 WBP11
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SNRPD2Small nuclear ribonucleoprotein Sm D2. (63 aa)
A306_00015272Cell division cycle 5-like protein. (102 aa)
A306_00015217Putative ATP-dependent RNA helicase DHX34. (270 aa)
XAB2XPA binding protein 2. (80 aa)
PRPF19Uncharacterized protein. (336 aa)
MFAP1Microfibrillar-associated protein 1. (409 aa)
A306_00015341Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16. (100 aa)
SF3A1Splicing factor 3a, subunit 1, 120kDa. (810 aa)
USP39Ubiquitin specific peptidase 39. (394 aa)
DQX1DEAQ box RNA-dependent ATPase 1. (500 aa)
SNRNP200Small nuclear ribonucleoprotein 200kDa (U5). (2105 aa)
PPRC1Peroxisome proliferator-activated receptor gamma, coactivator-related 1. (1202 aa)
CTNNBL1Catenin, beta like 1. (818 aa)
PPIEPeptidylprolyl isomerase E (Cyclophilin E). (292 aa)
DDX23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family. (769 aa)
PRPF3Pre-mRNA processing factor 3. (697 aa)
SF3B4Splicing factor 3b, subunit 4, 49kDa. (239 aa)
LSM7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (148 aa)
PPIHPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (151 aa)
ZMAT5Zinc finger, matrin-type 5. (170 aa)
SHDSrc homology 2 domain containing transforming protein D. (240 aa)
CCDC94Coiled-coil domain containing 94. (319 aa)
SNRPESmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
CCDC183Coiled-coil domain containing 183. (441 aa)
CWC25CWC25 spliceosome-associated protein homolog. (421 aa)
DDX42DEAD (Asp-Glu-Ala-Asp) box helicase 42. (867 aa)
A306_00011895RING finger protein 113A. (352 aa)
DHX8DEAH (Asp-Glu-Ala-His) box polypeptide 8. (1192 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (207 aa)
SYF2SYF2 pre-mRNA-splicing factor. (217 aa)
BUD13BUD13 homolog. (370 aa)
SF3A2Splicing factor 3a, subunit 2, 66kDa. (211 aa)
IKIK cytokine, down-regulator of HLA II. (541 aa)
ZMAT2Zinc finger, matrin-type 2. (208 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (112 aa)
SNIP1Smad nuclear interacting protein 1. (307 aa)
SF3A3Splicing factor 3a, subunit 3, 60kDa. (399 aa)
LSM10LSM10, U7 small nuclear RNA associated. (123 aa)
SNRNP40Small nuclear ribonucleoprotein 40kDa (U5). (348 aa)
TXNL4AThioredoxin-like 4A. (163 aa)
PRPF4Pre-mRNA processing factor 4. (572 aa)
TCERG1Transcription elongation regulator 1. (990 aa)
SNRPGSmall nuclear ribonucleoprotein G. (64 aa)
WDR70WD repeat domain 70. (440 aa)
ISY1ISY1 splicing factor homolog. (293 aa)
SNRPFSmall nuclear ribonucleoprotein polypeptide F. (143 aa)
WDR53WD repeat domain 53. (354 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (109 aa)
CWC15CWC15 spliceosome-associated protein. (179 aa)
SF3B1Splicing factor 3b, subunit 1, 155kDa, transcript variant X3. (1301 aa)
PLRG1Pleiotropic regulator 1. (513 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3. (126 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
BCAS2Breast carcinoma amplified sequence 2. (161 aa)
PPIL1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (147 aa)
SF3B3Splicing factor 3b, subunit 3, 130kDa. (1217 aa)
BUD31BUD31 homolog. (144 aa)
CWC27CWC27 spliceosome-associated protein homolog. (481 aa)
PRPF8Pre-mRNA processing factor 8. (2311 aa)
SRRM3Serine/arginine repetitive matrix 3. (516 aa)
DHX35DEAH (Asp-Glu-Ala-His) box polypeptide 35. (685 aa)
DHX38DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1088 aa)
RBM41RNA binding motif protein 41. (348 aa)
SMU1Uncharacterized protein. (499 aa)
PRPF6Pre-mRNA processing factor 6. (942 aa)
DNAJC5DnaJ (Hsp40) homolog, subfamily C, member 5. (198 aa)
SART3Squamous cell carcinoma antigen recognized by T cells 3. (886 aa)
TFIP11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (827 aa)
SNRNP35Small nuclear ribonucleoprotein 35kDa (U11/U12). (323 aa)
CRNKL1Crooked neck pre-mRNA splicing factor 1. (669 aa)
SLU7SLU7 homolog, splicing factor, transcript variant X1. (545 aa)
RBM22RNA binding motif protein 22. (420 aa)
DDX46DEAD (Asp-Glu-Ala-Asp) box polypeptide 46; Belongs to the DEAD box helicase family. (776 aa)
DAW1Dynein assembly factor with WDR repeat domains 1. (463 aa)
PRPF38APre-mRNA processing factor 38A. (310 aa)
CWF19L2Uncharacterized protein. (908 aa)
SNRPA1Small nuclear ribonucleoprotein polypeptide A. (232 aa)
RNPC3RNA-binding region (RNP1, RRM) containing 3. (602 aa)
LSM6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
PRPF18Pre-mRNA processing factor 18. (302 aa)
A306_00003989Pre-mRNA-splicing factor CWC22 homolog. (496 aa)
A306_00003988Pre-mRNA-splicing factor CWC22 homolog. (423 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (107 aa)
PHF5APHD finger protein 5A. (99 aa)
DHX15DEAH (Asp-Glu-Ala-His) box helicase 15. (686 aa)
SNW1SNW domain containing 1. (538 aa)
AQRAquarius intron-binding spliceosomal factor. (805 aa)
WDR25WD repeat domain 25. (509 aa)
WBP4WW domain binding protein 4. (394 aa)
TXNL4BThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
CDC5LCell division cycle 5-like. (654 aa)
SF3B6Splicing factor 3b, subunit 6, 14kDa. (125 aa)
SF3B5Splicing factor 3b, subunit 5, 10kDa. (127 aa)
CDC40Cell division cycle 40. (540 aa)
SNRPB2Small nuclear ribonucleoprotein polypeptide B. (226 aa)
EFTUD2116 kDa U5 small nuclear ribonucleoprotein component. (972 aa)
WBP11WW domain-binding protein 11. (646 aa)
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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