(11 nodes) Prp19 complex network (Columba livia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PLRG1	Pleiotropic regulator 1. (513 aa)
	CDC5L	Cell division cycle 5-like. (654 aa)
	RBM22	RNA binding motif protein 22. (420 aa)
	CRNKL1	Crooked neck pre-mRNA splicing factor 1. (669 aa)
	BCAS2	Breast carcinoma amplified sequence 2. (161 aa)
	A306_00015272	Cell division cycle 5-like protein. (102 aa)
	XAB2	XPA binding protein 2. (80 aa)
	PRPF19	Uncharacterized protein. (336 aa)
	CTNNBL1	Catenin, beta like 1. (818 aa)
	SYF2	SYF2 pre-mRNA-splicing factor. (217 aa)
	ISY1	ISY1 splicing factor homolog. (293 aa)

Your Current Organism:

Columba livia

NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A306_00015272	BCAS2	A0A2I0LGB1	A0A2I0LZS1	Cell division cycle 5-like protein.	Breast carcinoma amplified sequence 2.	0.960
A306_00015272	CRNKL1	A0A2I0LGB1	A0A2I0M9D0	Cell division cycle 5-like protein.	Crooked neck pre-mRNA splicing factor 1.	0.920
A306_00015272	CTNNBL1	A0A2I0LGB1	A0A2I0LJU2	Cell division cycle 5-like protein.	Catenin, beta like 1.	0.955
A306_00015272	ISY1	A0A2I0LGB1	A0A2I0LTY7	Cell division cycle 5-like protein.	ISY1 splicing factor homolog.	0.888
A306_00015272	PLRG1	A0A2I0LGB1	A0A2I0LXS4	Cell division cycle 5-like protein.	Pleiotropic regulator 1.	0.962
A306_00015272	PRPF19	A0A2I0LGB1	A0A2I0LGT9	Cell division cycle 5-like protein.	Uncharacterized protein.	0.961
A306_00015272	RBM22	A0A2I0LGB1	A0A2I0MA75	Cell division cycle 5-like protein.	RNA binding motif protein 22.	0.870
A306_00015272	SYF2	A0A2I0LGB1	A0A2I0LQ24	Cell division cycle 5-like protein.	SYF2 pre-mRNA-splicing factor.	0.898
A306_00015272	XAB2	A0A2I0LGB1	A0A2I0LGK7	Cell division cycle 5-like protein.	XPA binding protein 2.	0.915
BCAS2	A306_00015272	A0A2I0LZS1	A0A2I0LGB1	Breast carcinoma amplified sequence 2.	Cell division cycle 5-like protein.	0.960
BCAS2	CDC5L	A0A2I0LZS1	A0A2I0MTS7	Breast carcinoma amplified sequence 2.	Cell division cycle 5-like.	0.960
BCAS2	CRNKL1	A0A2I0LZS1	A0A2I0M9D0	Breast carcinoma amplified sequence 2.	Crooked neck pre-mRNA splicing factor 1.	0.934
BCAS2	CTNNBL1	A0A2I0LZS1	A0A2I0LJU2	Breast carcinoma amplified sequence 2.	Catenin, beta like 1.	0.945
BCAS2	ISY1	A0A2I0LZS1	A0A2I0LTY7	Breast carcinoma amplified sequence 2.	ISY1 splicing factor homolog.	0.828
BCAS2	PLRG1	A0A2I0LZS1	A0A2I0LXS4	Breast carcinoma amplified sequence 2.	Pleiotropic regulator 1.	0.998
BCAS2	PRPF19	A0A2I0LZS1	A0A2I0LGT9	Breast carcinoma amplified sequence 2.	Uncharacterized protein.	0.998
BCAS2	RBM22	A0A2I0LZS1	A0A2I0MA75	Breast carcinoma amplified sequence 2.	RNA binding motif protein 22.	0.899
BCAS2	SYF2	A0A2I0LZS1	A0A2I0LQ24	Breast carcinoma amplified sequence 2.	SYF2 pre-mRNA-splicing factor.	0.929
BCAS2	XAB2	A0A2I0LZS1	A0A2I0LGK7	Breast carcinoma amplified sequence 2.	XPA binding protein 2.	0.957
CDC5L	BCAS2	A0A2I0MTS7	A0A2I0LZS1	Cell division cycle 5-like.	Breast carcinoma amplified sequence 2.	0.960