STRINGSTRING
CLRN1 CLRN1 A306_00015351 A306_00015351 A306_00000428 A306_00000428 REEP6 REEP6 MFRP MFRP GNAT1 GNAT1 A306_00014986 A306_00014986 OPN1LW OPN1LW A306_00015028 A306_00015028 CABP2 CABP2 CABP4 CABP4 PDE6G PDE6G CRYBA2 CRYBA2 A306_00013448 A306_00013448 UNC119 UNC119 RDH8 RDH8 PDE6D PDE6D AQP2 AQP2 A306_00014190 A306_00014190 CRYBA1 CRYBA1 GJC1 GJC1 OPA1 OPA1 PDC PDC SLC24A2 SLC24A2 GLRB GLRB RHO RHO CRYGS CRYGS PDE6C PDE6C VSX1 VSX1 LUM LUM OPNP OPNP CABP1 CABP1 ADGRV1 ADGRV1 GNAT2 GNAT2 DRAM2 DRAM2 GUCA1B GUCA1B GUCA1A GUCA1A BBS2 BBS2 NOB1 NOB1 GUCY2F GUCY2F PDCL PDCL USH2A USH2A NYX NYX CRYAA CRYAA RPGR RPGR A306_00009281 A306_00009281 CNGB1 CNGB1 RGS9BP RGS9BP CRYBA4 CRYBA4 CRYBB1 CRYBB1 CRYBB3 CRYBB3 CRYBB2 CRYBB2 A306_00009539 A306_00009539 RRH RRH A306_00000042 A306_00000042 EPAS1 EPAS1 PRPH2 PRPH2 GRK7 GRK7 RPE65 RPE65 GJA3 GJA3 RLBP1 RLBP1 CLN6 CLN6 SLC24A1 SLC24A1 CRB1 CRB1 ATF6 ATF6 A306_00005787 A306_00005787 A306_00006603 A306_00006603 RGR RGR OPN4 OPN4 RORB RORB CACNB4 CACNB4 SEMA5B SEMA5B GNAT3 GNAT3 TH TH MYO3B MYO3B SLC4A10 SLC4A10 PDE6H PDE6H A306_00004490 A306_00004490 CNGA3 CNGA3 CRYBG3 CRYBG3 GUCA1C GUCA1C CNGA1 CNGA1 WFS1 WFS1 VSX2 VSX2 A306_00001985 A306_00001985 GJD2 GJD2 MYO3A MYO3A BFSP2 BFSP2 CRYGN CRYGN CLN5 CLN5 IMPG2 IMPG2 SLITRK6 SLITRK6 CLN8 CLN8 IMPG1 IMPG1 A306_00001132 A306_00001132 A306_00001112 A306_00001112 RDH10 RDH10 RP1 RP1 A306_00001738 A306_00001738 A306_00001739 A306_00001739 CNGB3 CNGB3 sws2 sws2 sws1 sws1 AQP5 AQP5 PDE6B PDE6B OPN1MSW OPN1MSW NXNL2 NXNL2 RD3 RD3 CPLX3 CPLX3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CLRN1Clarin-1. (232 aa)
A306_00015351Visinin. (156 aa)
A306_00000428Laminin N-terminal domain-containing protein. (159 aa)
REEP6Receptor expression-enhancing protein. (168 aa)
MFRPMembrane frizzled-related protein. (600 aa)
GNAT1Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1. (302 aa)
A306_00014986Guanylate cyclase. (842 aa)
OPN1LWOpsin 1 (Cone pigments), long-wave-sensitive (Color blindness, protan). (340 aa)
A306_00015028Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (273 aa)
CABP2Calcium binding protein 2. (214 aa)
CABP4Calcium binding protein 4. (200 aa)
PDE6GPhosphodiesterase 6G, cGMP-specific, rod, gamma. (87 aa)
CRYBA2Crystallin, beta A2; Belongs to the beta/gamma-crystallin family. (197 aa)
A306_00013448Retinol dehydrogenase 8; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (305 aa)
UNC119Unc-119 lipid binding chaperone. (188 aa)
RDH8Retinol dehydrogenase 8 (All-trans); Belongs to the short-chain dehydrogenases/reductases (SDR) family. (277 aa)
PDE6DRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta; Promotes the release of prenylated target proteins from cellular membranes. Modulates the activity of prenylated or palmitoylated Ras family members by regulating their subcellular location. Required for normal ciliary targeting of farnesylated target proteins, such as INPP5E. Modulates the subcellular location of target proteins by acting as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude. Stabilizes ARL3-GTP by decreasing the nucleotide [...] (131 aa)
AQP2Aquaporin 2 (Collecting duct); Belongs to the MIP/aquaporin (TC 1.A.8) family. (275 aa)
A306_00014190Guanylyl cyclase-activating protein 1. (188 aa)
CRYBA1Uncharacterized protein; Belongs to the beta/gamma-crystallin family. (170 aa)
GJC1Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (305 aa)
OPA1Optic atrophy 1 (Autosomal dominant); Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (1016 aa)
PDCPhosducin. (249 aa)
SLC24A2Solute carrier family 24 (Sodium/potassium/calcium exchanger), member 2, transcript variant X1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (651 aa)
GLRBGlycine receptor, beta, transcript variant X1; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (497 aa)
RHORhodopsin. (268 aa)
CRYGSCrystallin, gamma S; Belongs to the beta/gamma-crystallin family. (178 aa)
PDE6CPhosphodiesterase. (864 aa)
VSX1Visual system homeobox 1. (230 aa)
LUMLumican. (343 aa)
OPNPPinopsin. (349 aa)
CABP1Calcium binding protein 1, transcript variant X1. (226 aa)
ADGRV1Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family. (6237 aa)
GNAT2Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2. (395 aa)
DRAM2DNA-damage regulated autophagy modulator 2. (266 aa)
GUCA1BGuanylate cyclase activator 1B (Retina). (198 aa)
GUCA1AGuanylate cyclase activator 1A (Retina). (199 aa)
BBS2Bardet-Biedl syndrome 2 protein homolog. (699 aa)
NOB1NIN1/RPN12 binding protein 1 homolog. (340 aa)
GUCY2FGuanylate cyclase. (1096 aa)
PDCLPhosducin-like. (300 aa)
USH2AUsher syndrome 2A (Autosomal recessive, mild). (5209 aa)
NYXNyctalopin. (472 aa)
CRYAACrystallin, alpha A; Belongs to the small heat shock protein (HSP20) family. (173 aa)
RPGRRetinitis pigmentosa GTPase regulator. (737 aa)
A306_00009281Cyclic nucleotide-gated cation channel beta-1-like. (339 aa)
CNGB1Cyclic nucleotide gated channel beta 1. (700 aa)
RGS9BPRegulator of G protein signaling 9 binding protein, transcript variant X1. (237 aa)
CRYBA4Crystallin, beta A4; Belongs to the beta/gamma-crystallin family. (196 aa)
CRYBB1Crystallin, beta B1; Belongs to the beta/gamma-crystallin family. (238 aa)
CRYBB3Crystallin, beta B3; Belongs to the beta/gamma-crystallin family. (211 aa)
CRYBB2Crystallin, beta B2; Belongs to the beta/gamma-crystallin family. (229 aa)
A306_00009539Melanopsin. (575 aa)
RRHRetinal pigment epithelium-derived rhodopsin homolog; Belongs to the G-protein coupled receptor 1 family. (334 aa)
A306_00000042Uncharacterized protein. (770 aa)
EPAS1Endothelial PAS domain protein 1, transcript variant X1. (883 aa)
PRPH2Peripherin 2 (Retinal degeneration, slow). (354 aa)
GRK7G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily. (551 aa)
RPE65Retinal pigment epithelium-specific protein 65kDa. (530 aa)
GJA3Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (441 aa)
RLBP1Retinaldehyde binding protein 1. (316 aa)
CLN6Ceroid-lipofuscinosis, neuronal 6, late infantile, variant. (324 aa)
SLC24A1Solute carrier family 24 (Sodium/potassium/calcium exchanger), member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (660 aa)
CRB1Crumbs family member 1, photoreceptor morphogenesis associated. (1466 aa)
ATF6Activating transcription factor 6. (477 aa)
A306_00005787Retinol dehydrogenase 8; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (316 aa)
A306_00006603Vertebrate ancient opsin. (386 aa)
RGRRetinal G protein coupled receptor, transcript variant X1. (295 aa)
OPN4Opsin 4. (518 aa)
RORBRAR-related orphan receptor B. (476 aa)
CACNB4Calcium channel, voltage-dependent, beta 4 subunit. (401 aa)
SEMA5BSemaphorin-5B isoform X1. (1092 aa)
GNAT3Guanine nucleotide-binding protein G(T) subunit alpha-3. (354 aa)
THTyrosine hydroxylase. (492 aa)
MYO3BMyosin IIIB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1324 aa)
SLC4A10Solute carrier family 4, sodium bicarbonate transporter, member 10. (565 aa)
PDE6HPhosphodiesterase 6H, cGMP-specific, cone, gamma, transcript variant X1. (85 aa)
A306_00004490Tyrosine 3-monooxygenase. (459 aa)
CNGA3Cyclic nucleotide gated channel alpha 3. (717 aa)
CRYBG3Beta-gamma crystallin domain containing 3; Belongs to the beta/gamma-crystallin family. (2516 aa)
GUCA1CGuanylate cyclase activator 1C. (189 aa)
CNGA1Cyclic nucleotide gated channel alpha 1. (530 aa)
WFS1Wolfram syndrome 1 (Wolframin). (293 aa)
VSX2Visual system homeobox 2. (241 aa)
A306_00001985Photoreceptor outer segment membrane glycoprotein 2. (364 aa)
GJD2Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (304 aa)
MYO3AMyosin IIIA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1156 aa)
BFSP2Beaded filament structural protein 2, phakinin; Belongs to the intermediate filament family. (401 aa)
CRYGNCrystallin, gamma N; Belongs to the beta/gamma-crystallin family. (183 aa)
CLN5Ceroid-lipofuscinosis, neuronal 5. (351 aa)
IMPG2Interphotoreceptor matrix proteoglycan 2. (1409 aa)
SLITRK6SLIT and NTRK-like family, member 6. (623 aa)
CLN8Ceroid-lipofuscinosis, neuronal 8. (285 aa)
IMPG1Interphotoreceptor matrix proteoglycan 1. (989 aa)
A306_00001132Opsin-5; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (348 aa)
A306_00001112Opsin-5-like; Belongs to the G-protein coupled receptor 1 family. (251 aa)
RDH10Retinol dehydrogenase 10 (All-trans); Belongs to the short-chain dehydrogenases/reductases (SDR) family. (245 aa)
RP1Retinitis pigmentosa 1 (Autosomal dominant). (3486 aa)
A306_00001738Semaphorin-5A. (596 aa)
A306_00001739Semaphorin-5A. (496 aa)
CNGB3Cyclic nucleotide gated channel beta 3. (704 aa)
sws2Blue-sensitive opsin. (365 aa)
sws1Opsin 1 (Cone pigments), short-wave-sensitive. (347 aa)
AQP5Aquaporin-5; Belongs to the MIP/aquaporin (TC 1.A.8) family. (261 aa)
PDE6BPhosphodiesterase. (836 aa)
OPN1MSWRhodopsin. (355 aa)
NXNL2Nucleoredoxin-like protein 2. (156 aa)
RD3Retinal degeneration 3. (197 aa)
CPLX3Complexin-3. (157 aa)
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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