STRINGSTRING
SPTAN1 SPTAN1 HOMER1 HOMER1 PGM5 PGM5 SVIL SVIL SMPX SMPX VCL VCL SYNM SYNM
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SPTAN1Spectrin, alpha, non-erythrocytic 1, transcript variant X1. (2533 aa)
HOMER1Homer scaffolding protein 1. (356 aa)
PGM5Phosphoglucomutase 5. (487 aa)
SVILSupervillin, transcript variant X1. (2262 aa)
SMPXSmall muscle protein, X-linked, transcript variant X1. (89 aa)
VCLVinculin. (1119 aa)
SYNMSynemin, intermediate filament protein; Belongs to the intermediate filament family. (1523 aa)
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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