42 items (Columba livia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MRPL19	Mitochondrial ribosomal protein L19. (261 aa)
	A306_00015348	39S ribosomal protein L10, mitochondrial-like. (142 aa)
	MRPL43	Mitochondrial ribosomal protein L43. (150 aa)
	A306_00015230	39S ribosomal protein L38, mitochondrial-like. (144 aa)
	MRPL54	Mitochondrial ribosomal protein L54. (177 aa)
	MRPL16	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (199 aa)
	MRPL34	Mitochondrial ribosomal protein L34. (105 aa)
	MRPL17	Mitochondrial ribosomal protein L17. (120 aa)
	MTERF4	Mitochondrial transcription termination factor 4. (112 aa)
	A306_00000375	Uncharacterized protein. (100 aa)
	MRPL38	Mitochondrial ribosomal protein L38. (274 aa)
	MRPL10	Mitochondrial ribosomal protein L10. (166 aa)
	MRPL45	Mitochondrial ribosomal protein L45. (288 aa)
	MRPL41	Mitochondrial ribosomal protein L41. (114 aa)
	MRPL50	Mitochondrial ribosomal protein L50. (152 aa)
	MRPL2	Mitochondrial ribosomal protein L2. (297 aa)
	MRPL42	Mitochondrial ribosomal protein L42. (194 aa)
	MRPL22	Mitochondrial ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family. (211 aa)
	MRPL14	Mitochondrial ribosomal protein L14. (146 aa)
	NSUN4	NOP2/Sun domain family, member 4; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (411 aa)
	MRPL32	Mitochondrial ribosomal protein L32. (162 aa)
	MRPL48	Mitochondrial ribosomal protein L48. (212 aa)
	MRPL20	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family. (149 aa)
	MRPL28	Mitochondrial ribosomal protein L28. (194 aa)
	MRPS30	Mitochondrial ribosomal protein S30. (255 aa)
	ICT1	Immature colon carcinoma transcript 1. (151 aa)
	MRPL27	Mitochondrial ribosomal protein L27. (139 aa)
	MRPL40	Mitochondrial ribosomal protein L40. (245 aa)
	MRPL47	Mitochondrial ribosomal protein L47. (215 aa)
	MRPL44	Mitochondrial ribosomal protein L44. (273 aa)
	MRPL37	Mitochondrial ribosomal protein L37. (311 aa)
	MRPL46	Mitochondrial ribosomal protein L46. (122 aa)
	MRPL23	Mitochondrial ribosomal protein L23. (128 aa)
	MRPL51	Mitochondrial ribosomal protein L51. (134 aa)
	MRPL35	Mitochondrial ribosomal protein L35. (182 aa)
	MRPL3	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (393 aa)
	MRPL30	Mitochondrial ribosomal protein L30. (139 aa)
	MRPL39	Mitochondrial ribosomal protein L39. (308 aa)
	MRPL18	Mitochondrial ribosomal protein L18. (211 aa)
	MRPL53	Mitochondrial ribosomal protein L53. (109 aa)
	MRPL15	Mitochondrial ribosomal protein L15. (294 aa)
	MRPL13	Mitochondrial ribosomal protein L13. (179 aa)

Your Current Organism:

Columba livia

NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A306_00000375	A306_00015348	A0A2I0LP72	A0A2I0LG57	Uncharacterized protein.	39S ribosomal protein L10, mitochondrial-like.	0.619
A306_00000375	ICT1	A0A2I0LP72	A0A2I0M7N0	Uncharacterized protein.	Immature colon carcinoma transcript 1.	0.585
A306_00000375	MRPL10	A0A2I0LP72	A0A2I0LSB8	Uncharacterized protein.	Mitochondrial ribosomal protein L10.	0.619
A306_00000375	MRPL13	A0A2I0LP72	A0A2I0MXF9	Uncharacterized protein.	Mitochondrial ribosomal protein L13.	0.701
A306_00000375	MRPL14	A0A2I0LP72	A0A2I0LYE6	Uncharacterized protein.	Mitochondrial ribosomal protein L14.	0.502
A306_00000375	MRPL15	A0A2I0LP72	A0A2I0MX72	Uncharacterized protein.	Mitochondrial ribosomal protein L15.	0.667
A306_00000375	MRPL16	A0A2I0LP72	A0A2I0LH37	Uncharacterized protein.	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	0.727
A306_00000375	MRPL17	A0A2I0LP72	A0A2I0LLJ1	Uncharacterized protein.	Mitochondrial ribosomal protein L17.	0.662
A306_00000375	MRPL18	A0A2I0LP72	A0A2I0MU50	Uncharacterized protein.	Mitochondrial ribosomal protein L18.	0.592
A306_00000375	MRPL19	A0A2I0LP72	A0A2I0MU51	Uncharacterized protein.	Mitochondrial ribosomal protein L19.	0.709
A306_00000375	MRPL2	A0A2I0LP72	A0A2I0LV88	Uncharacterized protein.	Mitochondrial ribosomal protein L2.	0.715
A306_00000375	MRPL20	A0A2I0LP72	A0A2I0M3F4	Uncharacterized protein.	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.	0.545
A306_00000375	MRPL22	A0A2I0LP72	A0A2I0LWH9	Uncharacterized protein.	Mitochondrial ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.	0.652
A306_00000375	MRPL23	A0A2I0LP72	A0A2I0MHL4	Uncharacterized protein.	Mitochondrial ribosomal protein L23.	0.649
A306_00000375	MRPL27	A0A2I0LP72	A0A2I0M7Q2	Uncharacterized protein.	Mitochondrial ribosomal protein L27.	0.685
A306_00000375	MRPL28	A0A2I0LP72	A0A2I0M4C8	Uncharacterized protein.	Mitochondrial ribosomal protein L28.	0.551
A306_00000375	MRPL3	A0A2I0LP72	A0A2I0MQP8	Uncharacterized protein.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.658
A306_00000375	MRPL30	A0A2I0LP72	A0A2I0MS38	Uncharacterized protein.	Mitochondrial ribosomal protein L30.	0.637
A306_00000375	MRPL32	A0A2I0LP72	A0A2I0LZG2	Uncharacterized protein.	Mitochondrial ribosomal protein L32.	0.652
A306_00000375	MRPL34	A0A2I0LP72	A0A2I0LIB0	Uncharacterized protein.	Mitochondrial ribosomal protein L34.	0.643