38 items (Columba livia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A306_00014953	Chromodomain-helicase-DNA-binding protein 3-like. (524 aa)
	A306_00014015	Mitogen-activated protein kinase. (167 aa)
	ARC	Activity-regulated cytoskeleton-associated protein. (404 aa)
	A306_00001775	KIAA1468 ortholog. (1071 aa)
	TRIB1	Tribbles pseudokinase 1. (253 aa)
	PPP4R1	Protein phosphatase 4, regulatory subunit 1. (935 aa)
	ID2	Inhibitor of DNA binding 2, dominant negative helix-loop-helix protein, transcript variant X1. (134 aa)
	TRIB2	Tribbles pseudokinase 2. (343 aa)
	SGK1	Non-specific serine/threonine protein kinase. (517 aa)
	RPS6KA2	Ribosomal protein S6 kinase. (733 aa)
	RPS6KA5	Ribosomal protein S6 kinase, 90kDa, polypeptide 5. (765 aa)
	PPP4R4	Protein phosphatase 4, regulatory subunit 4. (875 aa)
	EGR4	Early growth response 4. (392 aa)
	RPS6KA3	Non-specific serine/threonine protein kinase. (707 aa)
	CHD4	Chromodomain helicase DNA binding protein 4, transcript variant X1. (1939 aa)
	NAB1	NGFI-A binding protein 1 (EGR1 binding protein 1). (208 aa)
	A306_00007180	Mitogen-activated protein kinase. (221 aa)
	A306_00007179	Mitogen-activated protein kinase 11. (75 aa)
	MAPK1	Mitogen-activated protein kinase 1, transcript variant X2. (263 aa)
	RRAD	Ras-related associated with diabetes. (285 aa)
	A306_00008325	Serine/threonine-protein phosphatase 4 regulatory subunit 1-like. (551 aa)
	MAPKAPK2	Mitogen-activated protein kinase-activated protein kinase 2. (309 aa)
	CREB1	cAMP responsive element binding protein 1. (327 aa)
	VRK3	Vaccinia related kinase 3. (332 aa)
	DUSP6	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (353 aa)
	SRF	Serum response factor isoform X2. (404 aa)
	EGR3	Early growth response 3. (341 aa)
	EGR1	Early growth response protein; Transcriptional regulator. Recognizes and binds to the DNA sequence 5'-GCG(T/G)GGGCG-3'(EGR-site) in the promoter region of target genes. Binds double-stranded target DNA, irrespective of the cytosine methylation status. Regulates the transcription of numerous target genes, and thereby plays an important role in regulating the response to growth factors, DNA damage, and ischemia. Plays a role in the regulation of cell survival, proliferation and cell death. Belongs to the EGR C2H2-type zinc-finger protein family. (480 aa)
	DUSP7	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (317 aa)
	ATF1	Activating transcription factor 1. (314 aa)
	ID3	Inhibitor of DNA binding 3, dominant negative helix-loop-helix protein. (97 aa)
	DUSP3	Dual specificity protein phosphatase; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (184 aa)
	RPS6KA1	Ribosomal protein S6 kinase, 90kDa, polypeptide 1. (773 aa)
	A306_00014013	Mitogen-activated protein kinase. (182 aa)
	MAPK15	Mitogen-activated protein kinase. (524 aa)
	CHD5	Chromodomain helicase DNA binding protein 5. (1014 aa)
	FNBP4	WW domain-containing protein. (479 aa)
	PPP2R1A	Protein phosphatase 2, regulatory subunit A, alpha. (503 aa)

Your Current Organism:

Columba livia

NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A306_00007179	DUSP6	A0A2I0MHA4	A0A2I0LWD7	Mitogen-activated protein kinase 11.	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.526
A306_00007179	DUSP7	A0A2I0MHA4	A0A2I0LSN7	Mitogen-activated protein kinase 11.	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.526
A306_00007179	MAPK1	A0A2I0MHA4	A0A2I0M868	Mitogen-activated protein kinase 11.	Mitogen-activated protein kinase 1, transcript variant X2.	0.453
A306_00007179	MAPKAPK2	A0A2I0MHA4	A0A2I0LZX9	Mitogen-activated protein kinase 11.	Mitogen-activated protein kinase-activated protein kinase 2.	0.795
A306_00007179	RPS6KA5	A0A2I0MHA4	A0A2I0MQ34	Mitogen-activated protein kinase 11.	Ribosomal protein S6 kinase, 90kDa, polypeptide 5.	0.631
A306_00007180	DUSP3	A0A2I0MHJ1	A0A2I0LNC1	Mitogen-activated protein kinase.	Dual specificity protein phosphatase; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.933
A306_00007180	DUSP6	A0A2I0MHJ1	A0A2I0LWD7	Mitogen-activated protein kinase.	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.526
A306_00007180	DUSP7	A0A2I0MHJ1	A0A2I0LSN7	Mitogen-activated protein kinase.	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.827
A306_00007180	MAPK1	A0A2I0MHJ1	A0A2I0M868	Mitogen-activated protein kinase.	Mitogen-activated protein kinase 1, transcript variant X2.	0.944
A306_00007180	MAPKAPK2	A0A2I0MHJ1	A0A2I0LZX9	Mitogen-activated protein kinase.	Mitogen-activated protein kinase-activated protein kinase 2.	0.980
A306_00007180	RPS6KA5	A0A2I0MHJ1	A0A2I0MQ34	Mitogen-activated protein kinase.	Ribosomal protein S6 kinase, 90kDa, polypeptide 5.	0.961
A306_00014013	A306_00014015	A0A2I0LKK4	R7VXR9	Mitogen-activated protein kinase.	Mitogen-activated protein kinase.	0.900
A306_00014013	DUSP3	A0A2I0LKK4	A0A2I0LNC1	Mitogen-activated protein kinase.	Dual specificity protein phosphatase; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.933
A306_00014013	DUSP6	A0A2I0LKK4	A0A2I0LWD7	Mitogen-activated protein kinase.	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.526
A306_00014013	DUSP7	A0A2I0LKK4	A0A2I0LSN7	Mitogen-activated protein kinase.	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.827
A306_00014013	MAPK1	A0A2I0LKK4	A0A2I0M868	Mitogen-activated protein kinase.	Mitogen-activated protein kinase 1, transcript variant X2.	0.943
A306_00014013	MAPKAPK2	A0A2I0LKK4	A0A2I0LZX9	Mitogen-activated protein kinase.	Mitogen-activated protein kinase-activated protein kinase 2.	0.978
A306_00014013	RPS6KA5	A0A2I0LKK4	A0A2I0MQ34	Mitogen-activated protein kinase.	Ribosomal protein S6 kinase, 90kDa, polypeptide 5.	0.961
A306_00014015	A306_00014013	R7VXR9	A0A2I0LKK4	Mitogen-activated protein kinase.	Mitogen-activated protein kinase.	0.900
A306_00014015	DUSP6	R7VXR9	A0A2I0LWD7	Mitogen-activated protein kinase.	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.526