STRINGSTRING
PRKRIP1 PRKRIP1 RBM5 RBM5 TXNL4A TXNL4A PRPF4 PRPF4 SRSF7 SRSF7 A306_00011566 A306_00011566 TCERG1 TCERG1 SNRPG SNRPG POLR2D POLR2D WDR70 WDR70 SNRPF SNRPF WDR53 WDR53 LSM3 LSM3 CWC15 CWC15 NOL8 NOL8 SF3B1 SF3B1 POLR2B POLR2B PLRG1 PLRG1 ZNF318 ZNF318 SNRPD3 SNRPD3 LSM5 LSM5 BCAS2 BCAS2 PPIL1 PPIL1 SF3B3 SF3B3 BUD31 BUD31 SREK1 SREK1 PPWD1 PPWD1 CWC27 CWC27 DHX33 DHX33 PRPF8 PRPF8 POLR2J POLR2J SRRM3 SRRM3 RALY RALY A306_00008984 A306_00008984 NKTR NKTR DHX35 DHX35 WBP11 WBP11 EFTUD2 EFTUD2 SNRPB2 SNRPB2 HNRNPH3 HNRNPH3 CCAR1 CCAR1 RBM17 RBM17 RALYL RALYL POLR2K POLR2K PRPF4B PRPF4B A306_00001702 A306_00001702 SNRNP48 SNRNP48 LIN28B LIN28B SF3B5 SF3B5 GCFC2 GCFC2 SF3B6 SF3B6 PPIL4 PPIL4 SYNCRIP SYNCRIP CDC5L CDC5L TXNL4B TXNL4B PAXBP1 PAXBP1 GTF2F2 GTF2F2 WBP4 WBP4 TPRG1L TPRG1L CUNH9orf78 CUNH9orf78 LUC7L LUC7L SNRNP25 SNRNP25 CARHSP1 CARHSP1 RBM41 RBM41 RBMX RBMX HTATSF1 HTATSF1 A306_00009263 A306_00009263 SDE2 SDE2 NCBP1 NCBP1 SMU1 SMU1 PTBP3 PTBP3 U2AF1 U2AF1 A306_00008363 A306_00008363 PRPF6 PRPF6 LUC7L3 LUC7L3 SRSF2 SRSF2 GPATCH1 GPATCH1 PPIL2 PPIL2 TFIP11 TFIP11 SNRNP35 SNRNP35 CRNKL1 CRNKL1 HNRNPAB HNRNPAB SLU7 SLU7 SNRPD2 SNRPD2 A306_00015272 A306_00015272 A306_00015217 A306_00015217 XAB2 XAB2 PRPF19 PRPF19 A306_00015223 A306_00015223 MFAP1 MFAP1 POLR2H POLR2H A306_00015341 A306_00015341 GTF2F1 GTF2F1 PRCC PRCC SF3A1 SF3A1 USP39 USP39 POLR2I POLR2I CACTIN CACTIN DQX1 DQX1 SNRNP200 SNRNP200 POLR2E POLR2E PUF60 PUF60 CTNNBL1 CTNNBL1 CIRBP CIRBP SNRPC SNRPC DDX23 DDX23 PRPF3 PRPF3 SF3B4 SF3B4 YBX3 YBX3 PCBP3 PCBP3 LSM7 LSM7 PPIH PPIH YBX1 YBX1 ZMAT5 ZMAT5 SHD SHD CCDC94 CCDC94 HNRNPM HNRNPM SNRPE SNRPE A306_00012749 A306_00012749 CCDC183 CCDC183 CWC25 CWC25 DDX42 DDX42 A306_00011895 A306_00011895 DHX8 DHX8 NSRP1 NSRP1 DNAJC8 DNAJC8 A306_00014132 A306_00014132 FAM32A FAM32A CHERP CHERP POLR2C POLR2C SUGP2 SUGP2 SUGP1 SUGP1 LSM4 LSM4 SRRM1 SRRM1 SYF2 SYF2 PPIL3 PPIL3 BUD13 BUD13 SF3A2 SF3A2 IK IK ZMAT2 ZMAT2 RBM6 RBM6 SNRPD1 SNRPD1 PPP1R8 PPP1R8 SNIP1 SNIP1 SF3A3 SF3A3 SNRNP40 SNRNP40 SRSF4 SRSF4 PCBP4 PCBP4 RBM22 RBM22 DDX46 DDX46 CUNHXorf56 CUNHXorf56 NKAP NKAP U2SURP U2SURP DAW1 DAW1 A306_00007698 A306_00007698 MAGOH MAGOH DHX9 DHX9 PRPF38A PRPF38A CWF19L2 CWF19L2 PDCD7 PDCD7 SNRPA1 SNRPA1 PTBP2 PTBP2 RNPC3 RNPC3 DHX32 DHX32 SMNDC1 SMNDC1 PRPF40A PRPF40A LSM6 LSM6 PRPF18 PRPF18 POLR2L POLR2L A306_00003989 A306_00003989 A306_00003988 A306_00003988 PPIG PPIG LSM8 LSM8 CSDC2 CSDC2 PHF5A PHF5A ZCRB1 ZCRB1 A306_00004855 A306_00004855 PARPBP PARPBP ZRSR2 ZRSR2 DHX15 DHX15 SLIRP SLIRP RBM25 RBM25 PNN PNN WDR25 WDR25 CCDC12 CCDC12 TRA2A TRA2A
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PRKRIP1PRKR interacting protein 1 (IL11 inducible). (153 aa)
RBM5RNA binding motif protein 5. (806 aa)
TXNL4AThioredoxin-like 4A. (163 aa)
PRPF4Pre-mRNA processing factor 4. (572 aa)
SRSF7Serine/arginine-rich splicing factor 7. (299 aa)
A306_00011566Serine/arginine-rich splicing factor 7-like. (303 aa)
TCERG1Transcription elongation regulator 1. (990 aa)
SNRPGSmall nuclear ribonucleoprotein G. (64 aa)
POLR2DPolymerase (RNA) II (DNA directed) polypeptide D. (161 aa)
WDR70WD repeat domain 70. (440 aa)
SNRPFSmall nuclear ribonucleoprotein polypeptide F. (143 aa)
WDR53WD repeat domain 53. (354 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (109 aa)
CWC15CWC15 spliceosome-associated protein. (179 aa)
NOL8Nucleolar protein 8. (1072 aa)
SF3B1Splicing factor 3b, subunit 1, 155kDa, transcript variant X3. (1301 aa)
POLR2BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1167 aa)
PLRG1Pleiotropic regulator 1. (513 aa)
ZNF318Zinc finger protein 318. (1586 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3. (126 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
BCAS2Breast carcinoma amplified sequence 2. (161 aa)
PPIL1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (147 aa)
SF3B3Splicing factor 3b, subunit 3, 130kDa. (1217 aa)
BUD31BUD31 homolog. (144 aa)
SREK1Splicing regulatory glutamine/lysine-rich protein 1. (457 aa)
PPWD1Peptidylprolyl isomerase domain and WD repeat containing 1, transcript variant X1. (622 aa)
CWC27CWC27 spliceosome-associated protein homolog. (481 aa)
DHX33DEAH (Asp-Glu-Ala-His) box polypeptide 33. (597 aa)
PRPF8Pre-mRNA processing factor 8. (2311 aa)
POLR2JPolymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa. (148 aa)
SRRM3Serine/arginine repetitive matrix 3. (516 aa)
RALYRALY heterogeneous nuclear ribonucleoprotein. (281 aa)
A306_00008984Small nuclear ribonucleoprotein-associated protein B'-like. (166 aa)
NKTRNatural killer cell triggering receptor, transcript variant X3. (1452 aa)
DHX35DEAH (Asp-Glu-Ala-His) box polypeptide 35. (685 aa)
WBP11WW domain-binding protein 11. (646 aa)
EFTUD2116 kDa U5 small nuclear ribonucleoprotein component. (972 aa)
SNRPB2Small nuclear ribonucleoprotein polypeptide B. (226 aa)
HNRNPH3Heterogeneous nuclear ribonucleoprotein H3 (2H9), transcript variant X1. (343 aa)
CCAR1Cell division cycle and apoptosis regulator protein 1. (1119 aa)
RBM17RNA binding motif protein 17, transcript variant X1. (401 aa)
RALYLRALY RNA binding protein-like. (249 aa)
POLR2KPolymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa. (58 aa)
PRPF4BPre-mRNA processing factor 4B. (881 aa)
A306_00001702Poly(RC)-binding protein 3, transcript variant X1. (452 aa)
SNRNP48Small nuclear ribonucleoprotein 48kDa (U11/U12). (253 aa)
LIN28BCCHC-type domain-containing protein. (250 aa)
SF3B5Splicing factor 3b, subunit 5, 10kDa. (127 aa)
GCFC2GC-rich sequence DNA-binding factor 2. (747 aa)
SF3B6Splicing factor 3b, subunit 6, 14kDa. (125 aa)
PPIL4Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (483 aa)
SYNCRIPSynaptotagmin binding, cytoplasmic RNA interacting protein, transcript variant X1. (635 aa)
CDC5LCell division cycle 5-like. (654 aa)
TXNL4BThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
PAXBP1PAX3 and PAX7 binding protein 1. (857 aa)
GTF2F2General transcription factor IIF, polypeptide 2, 30kDa, transcript variant X2. (322 aa)
WBP4WW domain binding protein 4. (394 aa)
TPRG1LTumor protein p63 regulated 1-like. (275 aa)
CUNH9orf78Uncharacterized protein. (296 aa)
LUC7LLUC7-like. (385 aa)
SNRNP25Small nuclear ribonucleoprotein 25kDa (U11/U12). (103 aa)
CARHSP1Calcium regulated heat stable protein 1, 24kDa, transcript variant X1. (152 aa)
RBM41RNA binding motif protein 41. (348 aa)
RBMXRNA binding motif protein, X-linked, transcript variant X1. (385 aa)
HTATSF1HIV-1 Tat specific factor 1. (435 aa)
A306_00009263Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (138 aa)
SDE2Sde2_N_Ubi domain-containing protein. (291 aa)
NCBP1Nuclear cap binding protein subunit 1, 80kDa. (772 aa)
SMU1Uncharacterized protein. (499 aa)
PTBP3Polypyrimidine tract binding protein 3. (197 aa)
U2AF1U2 small nuclear RNA auxiliary factor 1, transcript variant X1. (163 aa)
A306_00008363RNA-binding protein Raly. (228 aa)
PRPF6Pre-mRNA processing factor 6. (942 aa)
LUC7L3LUC7-like 3 pre-mRNA splicing factor. (498 aa)
SRSF2Serine/arginine-rich splicing factor 2. (205 aa)
GPATCH1G patch domain containing 1. (933 aa)
PPIL2Peptidylprolyl isomerase (Cyclophilin)-like 2. (508 aa)
TFIP11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (827 aa)
SNRNP35Small nuclear ribonucleoprotein 35kDa (U11/U12). (323 aa)
CRNKL1Crooked neck pre-mRNA splicing factor 1. (669 aa)
HNRNPABHeterogeneous nuclear ribonucleoprotein A/B. (262 aa)
SLU7SLU7 homolog, splicing factor, transcript variant X1. (545 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2. (63 aa)
A306_00015272Cell division cycle 5-like protein. (102 aa)
A306_00015217Putative ATP-dependent RNA helicase DHX34. (270 aa)
XAB2XPA binding protein 2. (80 aa)
PRPF19Uncharacterized protein. (336 aa)
A306_00015223Putative LOC102091525. (404 aa)
MFAP1Microfibrillar-associated protein 1. (409 aa)
POLR2HPolymerase (RNA) II (DNA directed) polypeptide H. (114 aa)
A306_00015341Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16. (100 aa)
GTF2F1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (214 aa)
PRCCPapillary renal cell carcinoma (Translocation-associated). (347 aa)
SF3A1Splicing factor 3a, subunit 1, 120kDa. (810 aa)
USP39Ubiquitin specific peptidase 39. (394 aa)
POLR2IPolymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa. (90 aa)
CACTINCactin, spliceosome C complex subunit. (750 aa)
DQX1DEAQ box RNA-dependent ATPase 1. (500 aa)
SNRNP200Small nuclear ribonucleoprotein 200kDa (U5). (2105 aa)
POLR2EPolymerase (RNA) II (DNA directed) polypeptide E, 25kDa. (139 aa)
PUF60Poly-U binding splicing factor 60KDa. (666 aa)
CTNNBL1Catenin, beta like 1. (818 aa)
CIRBPCold inducible RNA binding protein, transcript variant X1. (183 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (266 aa)
DDX23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family. (769 aa)
PRPF3Pre-mRNA processing factor 3. (697 aa)
SF3B4Splicing factor 3b, subunit 4, 49kDa. (239 aa)
YBX3CSP domain-containing protein. (192 aa)
PCBP3Poly(RC) binding protein 3. (342 aa)
LSM7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (148 aa)
PPIHPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (151 aa)
YBX1Y box binding protein 1. (248 aa)
ZMAT5Zinc finger, matrin-type 5. (170 aa)
SHDSrc homology 2 domain containing transforming protein D. (240 aa)
CCDC94Coiled-coil domain containing 94. (319 aa)
HNRNPMHeterogeneous nuclear ribonucleoprotein M. (593 aa)
SNRPESmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
A306_00012749RNA-binding Raly-like protein. (224 aa)
CCDC183Coiled-coil domain containing 183. (441 aa)
CWC25CWC25 spliceosome-associated protein homolog. (421 aa)
DDX42DEAD (Asp-Glu-Ala-Asp) box helicase 42. (867 aa)
A306_00011895RING finger protein 113A. (352 aa)
DHX8DEAH (Asp-Glu-Ala-His) box polypeptide 8. (1192 aa)
NSRP1Nuclear speckle splicing regulatory protein 1, transcript variant X2. (531 aa)
DNAJC8DnaJ (Hsp40) homolog, subfamily C, member 8. (234 aa)
A306_00014132Serine/arginine-rich splicing factor 6. (168 aa)
FAM32AFamily with sequence similarity 32, member A. (76 aa)
CHERPCalcium homeostasis endoplasmic reticulum protein. (785 aa)
POLR2CPolymerase (RNA) II (DNA directed) polypeptide C, 33kDa. (244 aa)
SUGP2SURP and G patch domain containing 2, transcript variant X1. (1102 aa)
SUGP1SURP and G patch domain containing 1. (638 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (207 aa)
SRRM1Serine/arginine repetitive matrix 1, transcript variant X6. (847 aa)
SYF2SYF2 pre-mRNA-splicing factor. (217 aa)
PPIL3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (199 aa)
BUD13BUD13 homolog. (370 aa)
SF3A2Splicing factor 3a, subunit 2, 66kDa. (211 aa)
IKIK cytokine, down-regulator of HLA II. (541 aa)
ZMAT2Zinc finger, matrin-type 2. (208 aa)
RBM6RNA binding motif protein 6, transcript variant X1. (1181 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (112 aa)
PPP1R8Protein phosphatase 1, regulatory subunit 8. (330 aa)
SNIP1Smad nuclear interacting protein 1. (307 aa)
SF3A3Splicing factor 3a, subunit 3, 60kDa. (399 aa)
SNRNP40Small nuclear ribonucleoprotein 40kDa (U5). (348 aa)
SRSF4Serine/arginine-rich splicing factor 4. (477 aa)
PCBP4Poly(RC) binding protein 4. (423 aa)
RBM22RNA binding motif protein 22. (420 aa)
DDX46DEAD (Asp-Glu-Ala-Asp) box polypeptide 46; Belongs to the DEAD box helicase family. (776 aa)
CUNHXorf56Uncharacterized protein. (164 aa)
NKAPNFKB activating protein. (280 aa)
U2SURPU2 snRNP-associated SURP domain containing. (993 aa)
DAW1Dynein assembly factor with WDR repeat domains 1. (463 aa)
A306_00007698Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (161 aa)
MAGOHMago homolog, exon junction complex core component. (102 aa)
DHX9DEAH (Asp-Glu-Ala-His) box helicase 9. (1229 aa)
PRPF38APre-mRNA processing factor 38A. (310 aa)
CWF19L2Uncharacterized protein. (908 aa)
PDCD7Programmed cell death 7. (261 aa)
SNRPA1Small nuclear ribonucleoprotein polypeptide A. (232 aa)
PTBP2Polypyrimidine tract binding protein 2. (349 aa)
RNPC3RNA-binding region (RNP1, RRM) containing 3. (602 aa)
DHX32DEAH (Asp-Glu-Ala-His) box polypeptide 32. (748 aa)
SMNDC1Survival motor neuron domain containing 1, transcript variant X1. (238 aa)
PRPF40APRP40 pre-mRNA processing factor 40 homolog A, transcript variant X1. (870 aa)
LSM6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
PRPF18Pre-mRNA processing factor 18. (302 aa)
POLR2LPolymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa. (67 aa)
A306_00003989Pre-mRNA-splicing factor CWC22 homolog. (496 aa)
A306_00003988Pre-mRNA-splicing factor CWC22 homolog. (423 aa)
PPIGPeptidylprolyl isomerase G (Cyclophilin G), transcript variant X1. (753 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (107 aa)
CSDC2Cold shock domain containing C2, RNA binding. (250 aa)
PHF5APHD finger protein 5A. (99 aa)
ZCRB1Zinc finger CCHC-type and RNA binding motif 1. (216 aa)
A306_00004855Putative RNA-binding protein Luc7-like 2. (250 aa)
PARPBPPARP1 binding protein. (581 aa)
ZRSR2Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2. (375 aa)
DHX15DEAH (Asp-Glu-Ala-His) box helicase 15. (686 aa)
SLIRPSRA stem-loop interacting RNA binding protein. (103 aa)
RBM25RNA binding motif protein 25, transcript variant X1. (821 aa)
PNNPinin, desmosome associated protein. (703 aa)
WDR25WD repeat domain 25. (509 aa)
CCDC12Coiled-coil domain containing 12. (174 aa)
TRA2ARRM domain-containing protein. (174 aa)
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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