STRINGSTRING
DCN DCN SMAD2 SMAD2 TGFB2 TGFB2 SERPIND1 SERPIND1 CTGF CTGF SDC1 SDC1 GAPDH GAPDH ALB ALB THBD THBD F3 F3 SMAD3 SMAD3 SMAD5 SMAD5 A306_00012671 A306_00012671 E2F4 E2F4 ACVRL1 ACVRL1 PLAT PLAT SDC3 SDC3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
DCNDecorin; May affect the rate of fibrils formation. (357 aa)
SMAD2Mothers against decapentaplegic homolog. (467 aa)
TGFB2Transforming growth factor beta; Belongs to the TGF-beta family. (412 aa)
SERPIND1Serpin peptidase inhibitor, clade D (Heparin cofactor), member 1; Belongs to the serpin family. (304 aa)
CTGFConnective tissue growth factor. (279 aa)
SDC1Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (287 aa)
GAPDHGlyceraldehyde-3-phosphate dehydrogenase. (327 aa)
ALBAlbumin. (609 aa)
THBDThrombomodulin. (204 aa)
F3Coagulation factor III (Thromboplastin, tissue factor). (272 aa)
SMAD3Mothers against decapentaplegic homolog. (321 aa)
SMAD5Mothers against decapentaplegic homolog. (465 aa)
A306_00012671Connective tissue growth factor. (343 aa)
E2F4E2F transcription factor 4, p107/p130-binding. (132 aa)
ACVRL1Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (494 aa)
PLATPlasminogen activator; Belongs to the peptidase S1 family. (557 aa)
SDC3Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (395 aa)
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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