(10 nodes) Linker histone H1/H5, and HMG box A DNA-binding domain, conserved site network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_007601	H15 domain-containing protein. (203 aa)
	ASZ78_012682	H15 domain-containing protein. (222 aa)
	ASZ78_013397	H15 domain-containing protein. (224 aa)
	ASZ78_016579	Uncharacterized protein. (554 aa)
	ASZ78_008415	Uncharacterized protein. (247 aa)
	ASZ78_001964	Uncharacterized protein. (208 aa)
	ASZ78_014426	H15 domain-containing protein. (190 aa)
	ASZ78_016360	Uncharacterized protein. (212 aa)
	ASZ78_005258	H15 domain-containing protein. (221 aa)
	ASZ78_005265	H15 domain-containing protein. (218 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_001964	ASZ78_005258	A0A226MUY3	A0A226NCC9	Uncharacterized protein.	H15 domain-containing protein.	0.429
ASZ78_001964	ASZ78_005265	A0A226MUY3	A0A226ND41	Uncharacterized protein.	H15 domain-containing protein.	0.429
ASZ78_001964	ASZ78_007601	A0A226MUY3	A0A226M7F8	Uncharacterized protein.	H15 domain-containing protein.	0.429
ASZ78_001964	ASZ78_008415	A0A226MUY3	A0A226MRX5	Uncharacterized protein.	Uncharacterized protein.	0.904
ASZ78_001964	ASZ78_012682	A0A226MUY3	A0A226MDQ8	Uncharacterized protein.	H15 domain-containing protein.	0.423
ASZ78_001964	ASZ78_013397	A0A226MUY3	A0A226MDW6	Uncharacterized protein.	H15 domain-containing protein.	0.429
ASZ78_001964	ASZ78_014426	A0A226MUY3	A0A226MZZ6	Uncharacterized protein.	H15 domain-containing protein.	0.579
ASZ78_001964	ASZ78_016579	A0A226MUY3	A0A226MM26	Uncharacterized protein.	Uncharacterized protein.	0.584
ASZ78_005258	ASZ78_001964	A0A226NCC9	A0A226MUY3	H15 domain-containing protein.	Uncharacterized protein.	0.429
ASZ78_005258	ASZ78_008415	A0A226NCC9	A0A226MRX5	H15 domain-containing protein.	Uncharacterized protein.	0.429
ASZ78_005258	ASZ78_012682	A0A226NCC9	A0A226MDQ8	H15 domain-containing protein.	H15 domain-containing protein.	0.941
ASZ78_005258	ASZ78_014426	A0A226NCC9	A0A226MZZ6	H15 domain-containing protein.	H15 domain-containing protein.	0.492
ASZ78_005258	ASZ78_016360	A0A226NCC9	A0A226N6P2	H15 domain-containing protein.	Uncharacterized protein.	0.423
ASZ78_005265	ASZ78_001964	A0A226ND41	A0A226MUY3	H15 domain-containing protein.	Uncharacterized protein.	0.429
ASZ78_005265	ASZ78_008415	A0A226ND41	A0A226MRX5	H15 domain-containing protein.	Uncharacterized protein.	0.429
ASZ78_005265	ASZ78_012682	A0A226ND41	A0A226MDQ8	H15 domain-containing protein.	H15 domain-containing protein.	0.552
ASZ78_005265	ASZ78_014426	A0A226ND41	A0A226MZZ6	H15 domain-containing protein.	H15 domain-containing protein.	0.492
ASZ78_005265	ASZ78_016360	A0A226ND41	A0A226N6P2	H15 domain-containing protein.	Uncharacterized protein.	0.423
ASZ78_007601	ASZ78_001964	A0A226M7F8	A0A226MUY3	H15 domain-containing protein.	Uncharacterized protein.	0.429
ASZ78_007601	ASZ78_008415	A0A226M7F8	A0A226MRX5	H15 domain-containing protein.	Uncharacterized protein.	0.429