(5 nodes) Valine transport, and Lysine transport network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_002561	Uncharacterized protein. (322 aa)
	ASZ78_008003	AA_permease_C domain-containing protein. (624 aa)
	ASZ78_008477	Fe2OG dioxygenase domain-containing protein. (218 aa)
	ASZ78_008326	Uncharacterized protein. (203 aa)
	ASZ78_008327	Uncharacterized protein. (315 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_002561	ASZ78_008326	A0A226MD67	A0A226NBP3	Uncharacterized protein.	Uncharacterized protein.	0.940
ASZ78_002561	ASZ78_008477	A0A226MD67	A0A226N2I8	Uncharacterized protein.	Fe2OG dioxygenase domain-containing protein.	0.722
ASZ78_008003	ASZ78_008326	A0A226MIC2	A0A226NBP3	AA_permease_C domain-containing protein.	Uncharacterized protein.	0.575
ASZ78_008003	ASZ78_008327	A0A226MIC2	A0A226NBR2	AA_permease_C domain-containing protein.	Uncharacterized protein.	0.603
ASZ78_008003	ASZ78_008477	A0A226MIC2	A0A226N2I8	AA_permease_C domain-containing protein.	Fe2OG dioxygenase domain-containing protein.	0.560
ASZ78_008326	ASZ78_002561	A0A226NBP3	A0A226MD67	Uncharacterized protein.	Uncharacterized protein.	0.940
ASZ78_008326	ASZ78_008003	A0A226NBP3	A0A226MIC2	Uncharacterized protein.	AA_permease_C domain-containing protein.	0.575
ASZ78_008326	ASZ78_008327	A0A226NBP3	A0A226NBR2	Uncharacterized protein.	Uncharacterized protein.	0.833
ASZ78_008326	ASZ78_008477	A0A226NBP3	A0A226N2I8	Uncharacterized protein.	Fe2OG dioxygenase domain-containing protein.	0.722
ASZ78_008327	ASZ78_008003	A0A226NBR2	A0A226MIC2	Uncharacterized protein.	AA_permease_C domain-containing protein.	0.603
ASZ78_008327	ASZ78_008326	A0A226NBR2	A0A226NBP3	Uncharacterized protein.	Uncharacterized protein.	0.833
ASZ78_008327	ASZ78_008477	A0A226NBR2	A0A226N2I8	Uncharacterized protein.	Fe2OG dioxygenase domain-containing protein.	0.722
ASZ78_008477	ASZ78_002561	A0A226N2I8	A0A226MD67	Fe2OG dioxygenase domain-containing protein.	Uncharacterized protein.	0.722
ASZ78_008477	ASZ78_008003	A0A226N2I8	A0A226MIC2	Fe2OG dioxygenase domain-containing protein.	AA_permease_C domain-containing protein.	0.560
ASZ78_008477	ASZ78_008326	A0A226N2I8	A0A226NBP3	Fe2OG dioxygenase domain-containing protein.	Uncharacterized protein.	0.722
ASZ78_008477	ASZ78_008327	A0A226N2I8	A0A226NBR2	Fe2OG dioxygenase domain-containing protein.	Uncharacterized protein.	0.722