(133 nodes) Mixed, incl. RAC1 GTPase cycle, and Small GTPase Rho network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_001752	BTB domain-containing protein. (187 aa)
	ASZ78_015151	BTB domain-containing protein. (335 aa)
	ASZ78_003589	Uncharacterized protein. (766 aa)
	ASZ78_016643	Uncharacterized protein. (191 aa)
	ASZ78_007880	Non-specific serine/threonine protein kinase. (641 aa)
	ASZ78_016181	Uncharacterized protein. (183 aa)
	ASZ78_009671	DH domain-containing protein. (446 aa)
	ASZ78_000822	Uncharacterized protein. (191 aa)
	ASZ78_006725	Uncharacterized protein. (228 aa)
	ASZ78_002130	Uncharacterized protein; Belongs to the DOCK family. (980 aa)
	ASZ78_002139	DHR-2 domain-containing protein; Belongs to the DOCK family. (786 aa)
	ASZ78_011175	PH domain-containing protein. (683 aa)
	ASZ78_002818	BTB domain-containing protein. (697 aa)
	ASZ78_003476	BAR domain-containing protein. (128 aa)
	ASZ78_003483	SH3 domain-containing protein. (942 aa)
	ASZ78_012301	Uncharacterized protein. (661 aa)
	ASZ78_006754	Uncharacterized protein. (2543 aa)
	ASZ78_001807	PH domain-containing protein. (275 aa)
	ASZ78_001805	PH domain-containing protein. (876 aa)
	ASZ78_002833	Uncharacterized protein. (720 aa)
	ASZ78_012373	Uncharacterized protein. (196 aa)
	ASZ78_013196	Uncharacterized protein. (664 aa)
	ASZ78_011290	Uncharacterized protein. (233 aa)
	ASZ78_000691	Uncharacterized protein. (1813 aa)
	ASZ78_005136	Uncharacterized protein; Belongs to the profilin family. (163 aa)
	ASZ78_007992	Uncharacterized protein. (182 aa)
	ASZ78_012150	Keratin. (147 aa)
	ASZ78_003898	Uncharacterized protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (2247 aa)
	ASZ78_009720	Uncharacterized protein. (246 aa)
	ASZ78_010326	Uncharacterized protein; Belongs to the DOCK family. (1754 aa)
	ASZ78_011704	Non-specific serine/threonine protein kinase. (1618 aa)
	ASZ78_004549	Uncharacterized protein. (218 aa)
	ASZ78_003937	Uncharacterized protein. (1189 aa)
	ASZ78_016188	Uncharacterized protein. (75 aa)
	ASZ78_016187	Uncharacterized protein. (1249 aa)
	ASZ78_015438	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1676 aa)
	ASZ78_013594	Profilin; Belongs to the profilin family. (140 aa)
	ASZ78_007243	Uncharacterized protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1743 aa)
	ASZ78_011445	Uncharacterized protein. (929 aa)
	ASZ78_011444	Uncharacterized protein. (1256 aa)
	ASZ78_015950	Rho-GAP domain-containing protein. (485 aa)
	ASZ78_007521	Uncharacterized protein. (1045 aa)
	ASZ78_010121	Uncharacterized protein. (254 aa)
	ASZ78_009123	Uncharacterized protein. (227 aa)
	ASZ78_010576	ELMO domain-containing protein. (693 aa)
	ASZ78_007748	Uncharacterized protein. (453 aa)
	ASZ78_003918	Uncharacterized protein. (475 aa)
	ASZ78_013288	PX domain-containing protein. (82 aa)
	ASZ78_013287	Uncharacterized protein. (740 aa)
	ASZ78_001122	Uncharacterized protein. (236 aa)
	ASZ78_010455	Uncharacterized protein. (857 aa)
	ASZ78_007776	Uncharacterized protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1405 aa)
	ASZ78_009055	ELMO domain-containing protein. (692 aa)
	ASZ78_010621	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2010 aa)
	ASZ78_000325	Uncharacterized protein. (574 aa)
	ASZ78_001910	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (194 aa)
	ASZ78_001908	Uncharacterized protein. (505 aa)
	ASZ78_010760	FH2 domain-containing protein. (1105 aa)
	ASZ78_016097	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (295 aa)
	ASZ78_009661	Uncharacterized protein. (396 aa)
	ASZ78_016099	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2301 aa)
	ASZ78_004486	Bcr-Abl_Oligo domain-containing protein. (205 aa)
	ASZ78_004498	Uncharacterized protein. (758 aa)
	ASZ78_004485	Uncharacterized protein. (867 aa)
	ASZ78_012639	Uncharacterized protein. (315 aa)
	ASZ78_008171	Uncharacterized protein. (1477 aa)
	ASZ78_007461	Uncharacterized protein. (488 aa)
	ASZ78_007462	Uncharacterized protein. (326 aa)
	ASZ78_006094	Uncharacterized protein. (166 aa)
	ASZ78_014448	Uncharacterized protein. (154 aa)
	ASZ78_001236	Uncharacterized protein. (313 aa)
	ASZ78_015020	Uncharacterized protein. (1739 aa)
	ASZ78_013677	Uncharacterized protein. (670 aa)
	ASZ78_013680	Uncharacterized protein. (168 aa)
	ASZ78_008446	Uncharacterized protein. (231 aa)
	ASZ78_001265	PH domain-containing protein. (253 aa)
	ASZ78_004743	DHR-2 domain-containing protein; Belongs to the DOCK family. (904 aa)
	ASZ78_011165	Uncharacterized protein. (205 aa)
	ASZ78_004744	DHR-1 domain-containing protein; Belongs to the DOCK family. (745 aa)
	ASZ78_015359	ANK_REP_REGION domain-containing protein. (562 aa)
	ASZ78_014867	Uncharacterized protein; Belongs to the DOCK family. (1191 aa)
	ASZ78_014866	SH3 domain-containing protein. (221 aa)
	ASZ78_013058	Uncharacterized protein. (404 aa)
	ASZ78_013778	Non-specific serine/threonine protein kinase. (544 aa)
	ASZ78_013059	Uncharacterized protein. (235 aa)
	ASZ78_016795	Rho-associated protein kinase; Protein kinase which is a key regulator of actin cytoskeleton and cell polarity. (1393 aa)
	ASZ78_008007	Uncharacterized protein. (1538 aa)
	ASZ78_014962	Uncharacterized protein; Belongs to the DOCK family. (944 aa)
	ASZ78_014961	DHR-2 domain-containing protein; Belongs to the DOCK family. (861 aa)
	ASZ78_013737	Rho-GAP domain-containing protein. (955 aa)
	ASZ78_014216	Uncharacterized protein. (191 aa)
	ASZ78_002063	Uncharacterized protein. (220 aa)
	ASZ78_008738	Rho-GAP domain-containing protein. (301 aa)
	ASZ78_008736	Uncharacterized protein. (600 aa)
	ASZ78_004958	Uncharacterized protein. (352 aa)
	ASZ78_001562	Non-specific serine/threonine protein kinase. (525 aa)
	ASZ78_005278	Uncharacterized protein. (200 aa)
	ASZ78_004955	Uncharacterized protein. (1325 aa)
	ASZ78_004959	SH3 domain-containing protein. (270 aa)
	ASZ78_004957	Uncharacterized protein. (379 aa)
	ASZ78_014611	Uncharacterized protein. (332 aa)
	ASZ78_015455	FH2 domain-containing protein. (50 aa)
	ASZ78_015454	Uncharacterized protein. (636 aa)
	ASZ78_008855	Uncharacterized protein. (1122 aa)
	ASZ78_002762	Uncharacterized protein. (334 aa)
	ASZ78_004247	Ras-GAP domain-containing protein. (1032 aa)
	ASZ78_010844	DH domain-containing protein. (314 aa)
	ASZ78_013532	Drf_GBD domain-containing protein. (121 aa)
	ASZ78_010843	PH domain-containing protein. (124 aa)
	ASZ78_004248	Calponin-homology (CH) domain-containing protein. (566 aa)
	ASZ78_008214	Cytoplasmic protein. (380 aa)
	ASZ78_013534	Uncharacterized protein. (468 aa)
	ASZ78_013533	GBD/FH3 domain-containing protein. (258 aa)
	ASZ78_005629	PH domain-containing protein. (1133 aa)
	ASZ78_007330	Uncharacterized protein. (48 aa)
	ASZ78_013571	Uncharacterized protein. (685 aa)
	ASZ78_013550	SH2 domain-containing protein. (262 aa)
	ASZ78_010933	Uncharacterized protein. (986 aa)
	ASZ78_015898	PRKG1_interact domain-containing protein. (208 aa)
	ASZ78_015919	Uncharacterized protein. (265 aa)
	ASZ78_010935	Uncharacterized protein. (668 aa)
	ASZ78_010906	Rho-GAP domain-containing protein. (578 aa)
	ASZ78_005728	Uncharacterized protein. (168 aa)
	ASZ78_016743	Non-specific serine/threonine protein kinase. (502 aa)
	ASZ78_006042	Uncharacterized protein. (658 aa)
	ASZ78_005496	Uncharacterized protein. (73 aa)
	ASZ78_015245	Profilin; Belongs to the profilin family. (135 aa)
	ASZ78_003308	Uncharacterized protein. (436 aa)
	ASZ78_005857	Uncharacterized protein. (635 aa)
	ASZ78_005858	Uncharacterized protein. (333 aa)
	ASZ78_014286	Uncharacterized protein. (1681 aa)
	ASZ78_009527	Uncharacterized protein. (746 aa)
	ASZ78_003437	Uncharacterized protein. (287 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000325	ASZ78_000691	A0A226MU35	A0A226MJ62	Uncharacterized protein.	Uncharacterized protein.	0.983
ASZ78_000325	ASZ78_000822	A0A226MU35	A0A226MF06	Uncharacterized protein.	Uncharacterized protein.	0.719
ASZ78_000325	ASZ78_001122	A0A226MU35	A0A226MSK1	Uncharacterized protein.	Uncharacterized protein.	0.719
ASZ78_000325	ASZ78_001562	A0A226MU35	A0A226NCC4	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.639
ASZ78_000325	ASZ78_001752	A0A226MU35	A0A226M6F4	Uncharacterized protein.	BTB domain-containing protein.	0.533
ASZ78_000325	ASZ78_002063	A0A226MU35	A0A226N952	Uncharacterized protein.	Uncharacterized protein.	0.544
ASZ78_000325	ASZ78_002818	A0A226MU35	A0A226MGZ3	Uncharacterized protein.	BTB domain-containing protein.	0.533
ASZ78_000325	ASZ78_003476	A0A226MU35	A0A226MH76	Uncharacterized protein.	BAR domain-containing protein.	0.463
ASZ78_000325	ASZ78_003483	A0A226MU35	A0A226MH83	Uncharacterized protein.	SH3 domain-containing protein.	0.463
ASZ78_000325	ASZ78_004549	A0A226MU35	A0A226MMH0	Uncharacterized protein.	Uncharacterized protein.	0.568
ASZ78_000325	ASZ78_005728	A0A226MU35	A0A226NJE6	Uncharacterized protein.	Uncharacterized protein.	0.846
ASZ78_000325	ASZ78_006094	A0A226MU35	A0A226MZN6	Uncharacterized protein.	Uncharacterized protein.	0.857
ASZ78_000325	ASZ78_006754	A0A226MU35	A0A226MHF4	Uncharacterized protein.	Uncharacterized protein.	0.985
ASZ78_000325	ASZ78_007521	A0A226MU35	A0A226MPQ9	Uncharacterized protein.	Uncharacterized protein.	0.410
ASZ78_000325	ASZ78_007880	A0A226MU35	A0A226MDP7	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.647
ASZ78_000325	ASZ78_008446	A0A226MU35	A0A226N0X1	Uncharacterized protein.	Uncharacterized protein.	0.719
ASZ78_000325	ASZ78_008855	A0A226MU35	A0A226NE28	Uncharacterized protein.	Uncharacterized protein.	0.410
ASZ78_000325	ASZ78_009527	A0A226MU35	A0A226NNF6	Uncharacterized protein.	Uncharacterized protein.	0.441
ASZ78_000325	ASZ78_009720	A0A226MU35	A0A226MLH2	Uncharacterized protein.	Uncharacterized protein.	0.698
ASZ78_000325	ASZ78_010121	A0A226MU35	A0A226MQ15	Uncharacterized protein.	Uncharacterized protein.	0.544