(6 nodes) Mixed, incl. Kalirin/Triple functional domain protein, pleckstrin homology (PH) domain 1, and Kalirin/Triple functional domain protein, SH3 domain 2 network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_011445	Uncharacterized protein. (929 aa)
	ASZ78_008446	Uncharacterized protein. (231 aa)
	ASZ78_011165	Uncharacterized protein. (205 aa)
	ASZ78_004955	Uncharacterized protein. (1325 aa)
	ASZ78_004959	SH3 domain-containing protein. (270 aa)
	ASZ78_004957	Uncharacterized protein. (379 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_004955	ASZ78_004957	A0A226NCF5	A0A226ND33	Uncharacterized protein.	Uncharacterized protein.	0.830
ASZ78_004955	ASZ78_004959	A0A226NCF5	A0A226NCH1	Uncharacterized protein.	SH3 domain-containing protein.	0.890
ASZ78_004955	ASZ78_008446	A0A226NCF5	A0A226N0X1	Uncharacterized protein.	Uncharacterized protein.	0.766
ASZ78_004955	ASZ78_011165	A0A226NCF5	A0A226N1D7	Uncharacterized protein.	Uncharacterized protein.	0.766
ASZ78_004957	ASZ78_004955	A0A226ND33	A0A226NCF5	Uncharacterized protein.	Uncharacterized protein.	0.830
ASZ78_004957	ASZ78_004959	A0A226ND33	A0A226NCH1	Uncharacterized protein.	SH3 domain-containing protein.	0.907
ASZ78_004957	ASZ78_008446	A0A226ND33	A0A226N0X1	Uncharacterized protein.	Uncharacterized protein.	0.766
ASZ78_004957	ASZ78_011165	A0A226ND33	A0A226N1D7	Uncharacterized protein.	Uncharacterized protein.	0.766
ASZ78_004957	ASZ78_011445	A0A226ND33	A0A226MP28	Uncharacterized protein.	Uncharacterized protein.	0.814
ASZ78_004959	ASZ78_004955	A0A226NCH1	A0A226NCF5	SH3 domain-containing protein.	Uncharacterized protein.	0.890
ASZ78_004959	ASZ78_004957	A0A226NCH1	A0A226ND33	SH3 domain-containing protein.	Uncharacterized protein.	0.907
ASZ78_004959	ASZ78_008446	A0A226NCH1	A0A226N0X1	SH3 domain-containing protein.	Uncharacterized protein.	0.766
ASZ78_004959	ASZ78_011165	A0A226NCH1	A0A226N1D7	SH3 domain-containing protein.	Uncharacterized protein.	0.766
ASZ78_004959	ASZ78_011445	A0A226NCH1	A0A226MP28	SH3 domain-containing protein.	Uncharacterized protein.	0.883
ASZ78_008446	ASZ78_004955	A0A226N0X1	A0A226NCF5	Uncharacterized protein.	Uncharacterized protein.	0.766
ASZ78_008446	ASZ78_004957	A0A226N0X1	A0A226ND33	Uncharacterized protein.	Uncharacterized protein.	0.766
ASZ78_008446	ASZ78_004959	A0A226N0X1	A0A226NCH1	Uncharacterized protein.	SH3 domain-containing protein.	0.766
ASZ78_008446	ASZ78_011165	A0A226N0X1	A0A226N1D7	Uncharacterized protein.	Uncharacterized protein.	0.444
ASZ78_008446	ASZ78_011445	A0A226N0X1	A0A226MP28	Uncharacterized protein.	Uncharacterized protein.	0.781
ASZ78_011165	ASZ78_004955	A0A226N1D7	A0A226NCF5	Uncharacterized protein.	Uncharacterized protein.	0.766