65 items (Callipepla squamata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_015302	AAA domain-containing protein; Belongs to the AAA ATPase family. (555 aa)
	ASZ78_016688	Uncharacterized protein. (254 aa)
	ASZ78_000418	Rhodopsin. (355 aa)
	ASZ78_010293	Uncharacterized protein. (1296 aa)
	ASZ78_004868	Cyclic nucleotide-binding domain-containing protein. (790 aa)
	ASZ78_015696	Photolyase/cryptochrome alpha/beta domain-containing protein. (621 aa)
	ASZ78_014597	Rhodopsin. (216 aa)
	ASZ78_009736	ATPase_AAA_core domain-containing protein; Belongs to the AAA ATPase family. (65 aa)
	ASZ78_016311	Uncharacterized protein. (189 aa)
	ASZ78_002568	Uncharacterized protein. (190 aa)
	ASZ78_013352	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (120 aa)
	ASZ78_012386	Thioredoxin-like_fold domain-containing protein. (207 aa)
	ASZ78_009672	CCDC66 domain-containing protein. (720 aa)
	ASZ78_004054	Uncharacterized protein. (238 aa)
	ASZ78_004038	Uncharacterized protein. (198 aa)
	ASZ78_004518	Uncharacterized protein. (178 aa)
	ASZ78_002503	Uncharacterized protein. (520 aa)
	ASZ78_002430	Phosphodiesterase. (882 aa)
	ASZ78_015178	G_PROTEIN_RECEP_F1_2 domain-containing protein. (359 aa)
	ASZ78_000283	Uncharacterized protein. (660 aa)
	ASZ78_014328	Rhodopsin. (351 aa)
	ASZ78_015615	Uncharacterized protein. (1371 aa)
	ASZ78_013324	Cyclic nucleotide-binding domain-containing protein. (678 aa)
	ASZ78_013753	Uncharacterized protein. (618 aa)
	ASZ78_000552	Rho-GAP domain-containing protein. (911 aa)
	ASZ78_015773	Uncharacterized protein. (120 aa)
	ASZ78_015774	Uncharacterized protein. (214 aa)
	ASZ78_015772	Uncharacterized protein. (1989 aa)
	ASZ78_008255	Uncharacterized protein. (87 aa)
	ASZ78_016909	Uncharacterized protein. (1299 aa)
	ASZ78_011815	Uncharacterized protein. (417 aa)
	ASZ78_006928	Uncharacterized protein. (359 aa)
	ASZ78_009096	Cyclic nucleotide-binding domain-containing protein. (986 aa)
	ASZ78_000086	Uncharacterized protein. (197 aa)
	ASZ78_007807	Uncharacterized protein. (670 aa)
	ASZ78_016093	TPR_REGION domain-containing protein. (465 aa)
	ASZ78_007810	WD_REPEATS_REGION domain-containing protein. (712 aa)
	ASZ78_016523	Uncharacterized protein. (132 aa)
	ASZ78_006535	Cell cycle control protein; Belongs to the CDC50/LEM3 family. (373 aa)
	ASZ78_006540	Uncharacterized protein. (962 aa)
	ASZ78_006302	Uncharacterized protein. (352 aa)
	ASZ78_001726	Uncharacterized protein. (2577 aa)
	ASZ78_002627	Uncharacterized protein. (354 aa)
	ASZ78_013788	Guanylate cyclase domain-containing protein. (155 aa)
	ASZ78_013786	Guanylate cyclase. (997 aa)
	ASZ78_014170	DAGKc domain-containing protein. (540 aa)
	ASZ78_002578	Uncharacterized protein. (305 aa)
	ASZ78_006526	Uncharacterized protein. (953 aa)
	ASZ78_009795	G_PROTEIN_RECEP_F1_2 domain-containing protein. (318 aa)
	ASZ78_008400	PPM-type phosphatase domain-containing protein. (1332 aa)
	ASZ78_001581	LRRcap domain-containing protein. (230 aa)
	ASZ78_001621	Arrestin_C domain-containing protein. (446 aa)
	ASZ78_005275	Uncharacterized protein. (85 aa)
	ASZ78_015046	Uncharacterized protein. (454 aa)
	ASZ78_005077	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (219 aa)
	ASZ78_014652	Uncharacterized protein. (282 aa)
	ASZ78_013544	LIM zinc-binding domain-containing protein. (364 aa)
	ASZ78_015131	G_PROTEIN_RECEP_F1_2 domain-containing protein. (318 aa)
	ASZ78_015866	Uncharacterized protein. (354 aa)
	ASZ78_005650	Uncharacterized protein. (404 aa)
	ASZ78_015879	Photolyase/cryptochrome alpha/beta domain-containing protein. (827 aa)
	ASZ78_010363	Uncharacterized protein. (237 aa)
	ASZ78_016687	Uncharacterized protein. (735 aa)
	ASZ78_003313	G_PROTEIN_RECEP_F1_2 domain-containing protein. (311 aa)
	ASZ78_012266	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (352 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000086	ASZ78_002430	A0A226MTV4	A0A226MJA3	Uncharacterized protein.	Phosphodiesterase.	0.610
ASZ78_000086	ASZ78_002503	A0A226MTV4	A0A226MJ68	Uncharacterized protein.	Uncharacterized protein.	0.605
ASZ78_000086	ASZ78_002627	A0A226MTV4	A0A226N3A8	Uncharacterized protein.	Uncharacterized protein.	0.449
ASZ78_000086	ASZ78_004868	A0A226MTV4	A0A226NPN9	Uncharacterized protein.	Cyclic nucleotide-binding domain-containing protein.	0.459
ASZ78_000086	ASZ78_013786	A0A226MTV4	A0A226N4M5	Uncharacterized protein.	Guanylate cyclase.	0.626
ASZ78_000086	ASZ78_015046	A0A226MTV4	A0A226NDF6	Uncharacterized protein.	Uncharacterized protein.	0.561
ASZ78_000418	ASZ78_001621	A0A226NLR5	A0A226NCJ8	Rhodopsin.	Arrestin_C domain-containing protein.	0.976
ASZ78_000418	ASZ78_002430	A0A226NLR5	A0A226MJA3	Rhodopsin.	Phosphodiesterase.	0.623
ASZ78_000418	ASZ78_002578	A0A226NLR5	A0A226N681	Rhodopsin.	Uncharacterized protein.	0.970
ASZ78_000418	ASZ78_002627	A0A226NLR5	A0A226N3A8	Rhodopsin.	Uncharacterized protein.	0.625
ASZ78_000418	ASZ78_003313	A0A226NLR5	A0A226NKU6	Rhodopsin.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.582
ASZ78_000418	ASZ78_004054	A0A226NLR5	A0A226MH51	Rhodopsin.	Uncharacterized protein.	0.641
ASZ78_000418	ASZ78_004868	A0A226NLR5	A0A226NPN9	Rhodopsin.	Cyclic nucleotide-binding domain-containing protein.	0.546
ASZ78_000418	ASZ78_005077	A0A226NLR5	A0A226NDM9	Rhodopsin.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.	0.463
ASZ78_000418	ASZ78_006928	A0A226NLR5	A0A226MS55	Rhodopsin.	Uncharacterized protein.	0.967
ASZ78_000418	ASZ78_009096	A0A226NLR5	A0A226MTE3	Rhodopsin.	Cyclic nucleotide-binding domain-containing protein.	0.704
ASZ78_000418	ASZ78_009795	A0A226NLR5	A0A226NBD8	Rhodopsin.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.523
ASZ78_000418	ASZ78_010293	A0A226NLR5	A0A226NMI0	Rhodopsin.	Uncharacterized protein.	0.459
ASZ78_000418	ASZ78_010363	A0A226NLR5	A0A226NJP9	Rhodopsin.	Uncharacterized protein.	0.480
ASZ78_000418	ASZ78_012266	A0A226NLR5	A0A226NL99	Rhodopsin.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.458