(9 nodes) Stereocilia ankle link complex network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_010880	Uncharacterized protein. (926 aa)
	ASZ78_002513	Uncharacterized protein. (1483 aa)
	ASZ78_002514	Uncharacterized protein. (460 aa)
	ASZ78_002512	Uncharacterized protein. (188 aa)
	ASZ78_002444	Uncharacterized protein. (805 aa)
	ASZ78_012401	Uncharacterized protein. (792 aa)
	ASZ78_001978	GPS domain-containing protein. (5325 aa)
	ASZ78_001975	Uncharacterized protein. (241 aa)
	ASZ78_011583	Uncharacterized protein. (876 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_001975	ASZ78_001978	A0A226MY24	A0A226MXX4	Uncharacterized protein.	GPS domain-containing protein.	0.915
ASZ78_001975	ASZ78_002444	A0A226MY24	A0A226MTC0	Uncharacterized protein.	Uncharacterized protein.	0.494
ASZ78_001975	ASZ78_010880	A0A226MY24	A0A226NIT8	Uncharacterized protein.	Uncharacterized protein.	0.517
ASZ78_001975	ASZ78_011583	A0A226MY24	A0A226NGA9	Uncharacterized protein.	Uncharacterized protein.	0.451
ASZ78_001978	ASZ78_001975	A0A226MXX4	A0A226MY24	GPS domain-containing protein.	Uncharacterized protein.	0.915
ASZ78_001978	ASZ78_002444	A0A226MXX4	A0A226MTC0	GPS domain-containing protein.	Uncharacterized protein.	0.494
ASZ78_001978	ASZ78_002512	A0A226MXX4	A0A226NDB8	GPS domain-containing protein.	Uncharacterized protein.	0.465
ASZ78_001978	ASZ78_002513	A0A226MXX4	A0A226NCP1	GPS domain-containing protein.	Uncharacterized protein.	0.465
ASZ78_001978	ASZ78_002514	A0A226MXX4	A0A226NCS5	GPS domain-containing protein.	Uncharacterized protein.	0.465
ASZ78_001978	ASZ78_010880	A0A226MXX4	A0A226NIT8	GPS domain-containing protein.	Uncharacterized protein.	0.622
ASZ78_001978	ASZ78_011583	A0A226MXX4	A0A226NGA9	GPS domain-containing protein.	Uncharacterized protein.	0.560
ASZ78_002444	ASZ78_001975	A0A226MTC0	A0A226MY24	Uncharacterized protein.	Uncharacterized protein.	0.494
ASZ78_002444	ASZ78_001978	A0A226MTC0	A0A226MXX4	Uncharacterized protein.	GPS domain-containing protein.	0.494
ASZ78_002444	ASZ78_002512	A0A226MTC0	A0A226NDB8	Uncharacterized protein.	Uncharacterized protein.	0.621
ASZ78_002444	ASZ78_002513	A0A226MTC0	A0A226NCP1	Uncharacterized protein.	Uncharacterized protein.	0.621
ASZ78_002444	ASZ78_002514	A0A226MTC0	A0A226NCS5	Uncharacterized protein.	Uncharacterized protein.	0.621
ASZ78_002444	ASZ78_010880	A0A226MTC0	A0A226NIT8	Uncharacterized protein.	Uncharacterized protein.	0.414
ASZ78_002444	ASZ78_011583	A0A226MTC0	A0A226NGA9	Uncharacterized protein.	Uncharacterized protein.	0.501
ASZ78_002512	ASZ78_001978	A0A226NDB8	A0A226MXX4	Uncharacterized protein.	GPS domain-containing protein.	0.465
ASZ78_002512	ASZ78_002444	A0A226NDB8	A0A226MTC0	Uncharacterized protein.	Uncharacterized protein.	0.621