(15 nodes) Glycine metabolic process network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_013100	Uncharacterized protein. (128 aa)
	ASZ78_016961	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family. (355 aa)
	ASZ78_000150	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (525 aa)
	ASZ78_013649	Beta_elim_lyase domain-containing protein. (381 aa)
	ASZ78_001720	Epimerase domain-containing protein. (390 aa)
	ASZ78_014459	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family. (201 aa)
	ASZ78_003065	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family. (162 aa)
	ASZ78_017065	Beta_elim_lyase domain-containing protein. (848 aa)
	ASZ78_001929	Uncharacterized protein. (437 aa)
	ASZ78_002193	SHMT domain-containing protein. (414 aa)
	ASZ78_001927	Uncharacterized protein. (466 aa)
	ASZ78_001928	Uncharacterized protein. (461 aa)
	ASZ78_014122	FMN hydroxy acid dehydrogenase domain-containing protein. (372 aa)
	ASZ78_013101	Uncharacterized protein. (170 aa)
	ASZ78_013099	Uncharacterized protein. (147 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000150	ASZ78_002193	A0A226MRA5	A0A226NMZ5	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	SHMT domain-containing protein.	0.885
ASZ78_000150	ASZ78_003065	A0A226MRA5	A0A226N523	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.780
ASZ78_000150	ASZ78_013099	A0A226MRA5	A0A226NH29	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein.	0.587
ASZ78_000150	ASZ78_013100	A0A226MRA5	A0A226NHM0	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein.	0.587
ASZ78_000150	ASZ78_013101	A0A226MRA5	A0A226NH22	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein.	0.587
ASZ78_000150	ASZ78_013649	A0A226MRA5	A0A226N0H8	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Beta_elim_lyase domain-containing protein.	0.621
ASZ78_000150	ASZ78_014122	A0A226MRA5	A0A226ND18	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	FMN hydroxy acid dehydrogenase domain-containing protein.	0.814
ASZ78_000150	ASZ78_014459	A0A226MRA5	A0A226N4E1	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	0.537
ASZ78_000150	ASZ78_016961	A0A226MRA5	A0A226MLM2	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	0.827
ASZ78_000150	ASZ78_017065	A0A226MRA5	A0A226N693	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Beta_elim_lyase domain-containing protein.	0.800
ASZ78_001720	ASZ78_002193	A0A226N311	A0A226NMZ5	Epimerase domain-containing protein.	SHMT domain-containing protein.	0.617
ASZ78_001720	ASZ78_013099	A0A226N311	A0A226NH29	Epimerase domain-containing protein.	Uncharacterized protein.	0.440
ASZ78_001720	ASZ78_013100	A0A226N311	A0A226NHM0	Epimerase domain-containing protein.	Uncharacterized protein.	0.440
ASZ78_001720	ASZ78_013101	A0A226N311	A0A226NH22	Epimerase domain-containing protein.	Uncharacterized protein.	0.440
ASZ78_001720	ASZ78_013649	A0A226N311	A0A226N0H8	Epimerase domain-containing protein.	Beta_elim_lyase domain-containing protein.	0.961
ASZ78_001720	ASZ78_014459	A0A226N311	A0A226N4E1	Epimerase domain-containing protein.	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	0.614
ASZ78_001720	ASZ78_016961	A0A226N311	A0A226MLM2	Epimerase domain-containing protein.	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	0.529
ASZ78_001927	ASZ78_001928	A0A226N728	A0A226N792	Uncharacterized protein.	Uncharacterized protein.	0.968
ASZ78_001927	ASZ78_001929	A0A226N728	A0A226N6Y1	Uncharacterized protein.	Uncharacterized protein.	0.906
ASZ78_001928	ASZ78_001927	A0A226N792	A0A226N728	Uncharacterized protein.	Uncharacterized protein.	0.968