(37 nodes) Response to nutrient network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_005878	PH domain-containing protein. (574 aa)
	ASZ78_007582	LRAT domain-containing protein. (232 aa)
	ASZ78_016612	BHLH domain-containing protein. (123 aa)
	ASZ78_003368	Uncharacterized protein. (461 aa)
	ASZ78_003369	Albumin domain-containing protein. (143 aa)
	ASZ78_005304	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (232 aa)
	ASZ78_005112	Uncharacterized protein. (95 aa)
	ASZ78_002850	Uncharacterized protein. (429 aa)
	ASZ78_015468	Uncharacterized protein. (315 aa)
	ASZ78_011722	Uncharacterized protein; Belongs to the cytochrome P450 family. (517 aa)
	ASZ78_010644	Uncharacterized protein. (654 aa)
	ASZ78_003923	Uncharacterized protein. (271 aa)
	ASZ78_012296	Uncharacterized protein. (808 aa)
	ASZ78_007643	MFS domain-containing protein. (429 aa)
	ASZ78_008097	G_PROTEIN_RECEP_F1_2 domain-containing protein. (364 aa)
	ASZ78_006074	Alkaline phosphatase. (525 aa)
	ASZ78_014266	BPL/LPL catalytic domain-containing protein. (240 aa)
	ASZ78_013944	Uncharacterized protein. (369 aa)
	ASZ78_014018	ANK_REP_REGION domain-containing protein. (139 aa)
	ASZ78_013795	Folate_rec domain-containing protein. (243 aa)
	ASZ78_016244	Uncharacterized protein. (636 aa)
	ASZ78_006526	Uncharacterized protein. (953 aa)
	ASZ78_006838	Uncharacterized protein. (685 aa)
	ASZ78_009946	Uncharacterized protein. (1089 aa)
	ASZ78_009948	Uncharacterized protein. (378 aa)
	ASZ78_009947	Uncharacterized protein. (412 aa)
	ASZ78_010007	Serine/threonine-protein kinase TOR. (1379 aa)
	ASZ78_008780	Uncharacterized protein. (247 aa)
	ASZ78_017108	PlsC domain-containing protein. (765 aa)
	ASZ78_005072	Uncharacterized protein; Belongs to the cytochrome P450 family. (542 aa)
	ASZ78_014834	ABC transporter domain-containing protein. (678 aa)
	ASZ78_014832	ABC transporter domain-containing protein. (503 aa)
	ASZ78_016614	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (252 aa)
	ASZ78_016061	Transket_pyr domain-containing protein. (231 aa)
	ASZ78_000676	ENDO3c domain-containing protein. (318 aa)
	ASZ78_011627	FAD-binding FR-type domain-containing protein. (385 aa)
	ASZ78_014265	Uncharacterized protein. (576 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_002850	ASZ78_016614	A0A226MKQ5	A0A226NDX1	Uncharacterized protein.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.557
ASZ78_003368	ASZ78_003369	A0A226MDV8	A0A226ME89	Uncharacterized protein.	Albumin domain-containing protein.	0.782
ASZ78_003368	ASZ78_016614	A0A226MDV8	A0A226NDX1	Uncharacterized protein.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.560
ASZ78_003369	ASZ78_003368	A0A226ME89	A0A226MDV8	Albumin domain-containing protein.	Uncharacterized protein.	0.782
ASZ78_003369	ASZ78_016614	A0A226ME89	A0A226NDX1	Albumin domain-containing protein.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.536
ASZ78_003923	ASZ78_016244	A0A226MRM5	A0A226N6G6	Uncharacterized protein.	Uncharacterized protein.	0.998
ASZ78_005072	ASZ78_011722	A0A226NCX7	A0A226MLL7	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.696
ASZ78_005878	ASZ78_009946	A0A226NMY0	A0A226N9S7	PH domain-containing protein.	Uncharacterized protein.	0.762
ASZ78_005878	ASZ78_009947	A0A226NMY0	A0A226N9V2	PH domain-containing protein.	Uncharacterized protein.	0.762
ASZ78_005878	ASZ78_009948	A0A226NMY0	A0A226N9U0	PH domain-containing protein.	Uncharacterized protein.	0.762
ASZ78_006074	ASZ78_012296	A0A226MZL8	A0A226MSB8	Alkaline phosphatase.	Uncharacterized protein.	0.577
ASZ78_009946	ASZ78_005878	A0A226N9S7	A0A226NMY0	Uncharacterized protein.	PH domain-containing protein.	0.762
ASZ78_009947	ASZ78_005878	A0A226N9V2	A0A226NMY0	Uncharacterized protein.	PH domain-containing protein.	0.762
ASZ78_009948	ASZ78_005878	A0A226N9U0	A0A226NMY0	Uncharacterized protein.	PH domain-containing protein.	0.762
ASZ78_011627	ASZ78_015468	A0A226NGB3	A0A226ML28	FAD-binding FR-type domain-containing protein.	Uncharacterized protein.	0.491
ASZ78_011722	ASZ78_005072	A0A226MLL7	A0A226NCX7	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.696
ASZ78_012296	ASZ78_006074	A0A226MSB8	A0A226MZL8	Uncharacterized protein.	Alkaline phosphatase.	0.577
ASZ78_014265	ASZ78_014266	A0A226NMI2	A0A226NN88	Uncharacterized protein.	BPL/LPL catalytic domain-containing protein.	0.899
ASZ78_014265	ASZ78_016061	A0A226NMI2	A0A226NE57	Uncharacterized protein.	Transket_pyr domain-containing protein.	0.513
ASZ78_014266	ASZ78_014265	A0A226NN88	A0A226NMI2	BPL/LPL catalytic domain-containing protein.	Uncharacterized protein.	0.899