5 items (Callipepla squamata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_002568	Uncharacterized protein. (190 aa)
	ASZ78_004054	Uncharacterized protein. (238 aa)
	ASZ78_004038	Uncharacterized protein. (198 aa)
	ASZ78_004518	Uncharacterized protein. (178 aa)
	ASZ78_009584	Uncharacterized protein. (165 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_002568	ASZ78_004038	A0A226MA20	A0A226MHC7	Uncharacterized protein.	Uncharacterized protein.	0.922
ASZ78_002568	ASZ78_004054	A0A226MA20	A0A226MH51	Uncharacterized protein.	Uncharacterized protein.	0.904
ASZ78_002568	ASZ78_004518	A0A226MA20	A0A226MHW0	Uncharacterized protein.	Uncharacterized protein.	0.707
ASZ78_004038	ASZ78_002568	A0A226MHC7	A0A226MA20	Uncharacterized protein.	Uncharacterized protein.	0.922
ASZ78_004038	ASZ78_004054	A0A226MHC7	A0A226MH51	Uncharacterized protein.	Uncharacterized protein.	0.928
ASZ78_004054	ASZ78_002568	A0A226MH51	A0A226MA20	Uncharacterized protein.	Uncharacterized protein.	0.904
ASZ78_004054	ASZ78_004038	A0A226MH51	A0A226MHC7	Uncharacterized protein.	Uncharacterized protein.	0.928
ASZ78_004054	ASZ78_004518	A0A226MH51	A0A226MHW0	Uncharacterized protein.	Uncharacterized protein.	0.706
ASZ78_004518	ASZ78_002568	A0A226MHW0	A0A226MA20	Uncharacterized protein.	Uncharacterized protein.	0.707
ASZ78_004518	ASZ78_004054	A0A226MHW0	A0A226MH51	Uncharacterized protein.	Uncharacterized protein.	0.706