(45 nodes) Epithelial cell migration network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_012114	Ephrin RBD domain-containing protein; Belongs to the ephrin family. (333 aa)
	ASZ78_005350	Kazal-like domain-containing protein. (303 aa)
	ASZ78_011375	Uncharacterized protein; Belongs to the peptidase S9B family. (725 aa)
	ASZ78_009607	Uncharacterized protein. (928 aa)
	ASZ78_007404	Galectin. (301 aa)
	ASZ78_008430	Neuropilin; Belongs to the neuropilin family. (889 aa)
	ASZ78_001705	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1220 aa)
	ASZ78_016322	MADS-box domain-containing protein. (437 aa)
	ASZ78_014326	Uncharacterized protein. (419 aa)
	ASZ78_009680	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (163 aa)
	ASZ78_009682	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1643 aa)
	ASZ78_011722	Uncharacterized protein; Belongs to the cytochrome P450 family. (517 aa)
	ASZ78_007776	Uncharacterized protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1405 aa)
	ASZ78_012354	Uncharacterized protein; Belongs to the CD36 family. (513 aa)
	CXCL8-3	Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family. (114 aa)
	CXCL8-4	Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family. (93 aa)
	ASZ78_004806	Sulfatase domain-containing protein. (574 aa)
	ASZ78_001805	PH domain-containing protein. (876 aa)
	ASZ78_003581	Zn_dep_PLPC domain-containing protein. (661 aa)
	ASZ78_003349	Uncharacterized protein. (4497 aa)
	ASZ78_002142	Uncharacterized protein. (785 aa)
	ASZ78_009132	Uncharacterized protein. (507 aa)
	ASZ78_009133	Uncharacterized protein. (196 aa)
	ASZ78_012224	Protein kinase domain-containing protein. (682 aa)
	ASZ78_012112	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. (410 aa)
	ASZ78_005196	Nanos-type domain-containing protein; Belongs to the nanos family. (257 aa)
	ASZ78_000398	Uncharacterized protein. (443 aa)
	ASZ78_003328	Uncharacterized protein. (1014 aa)
	ASZ78_012284	Uncharacterized protein. (712 aa)
	ASZ78_005736	Uncharacterized protein. (167 aa)
	ASZ78_002350	PDZ domain-containing protein. (318 aa)
	ASZ78_013071	EGF-like domain-containing protein. (344 aa)
	ASZ78_004251	Protein S100; Belongs to the S-100 family. (135 aa)
	ASZ78_004263	Sulfatase domain-containing protein. (381 aa)
	ASZ78_004262	Sulfatase domain-containing protein. (154 aa)
	ASZ78_014001	Uncharacterized protein. (302 aa)
	ASZ78_015457	CTCK domain-containing protein. (188 aa)
	ASZ78_005072	Uncharacterized protein; Belongs to the cytochrome P450 family. (542 aa)
	ASZ78_004307	TYR_PHOSPHATASE_2 domain-containing protein. (148 aa)
	ASZ78_013729	Uncharacterized protein. (491 aa)
	ASZ78_009455	Uncharacterized protein. (264 aa)
	ASZ78_011245	Uncharacterized protein. (459 aa)
	ASZ78_012310	Uncharacterized protein. (180 aa)
	ASZ78_013803	Ig-like domain-containing protein. (575 aa)
	ASZ78_008093	PDZ domain-containing protein. (324 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_001705	ASZ78_007776	A0A226MHK7	A0A226MT22	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Uncharacterized protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.588
ASZ78_001705	ASZ78_008430	A0A226MHK7	A0A226MHI9	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Neuropilin; Belongs to the neuropilin family.	0.973
ASZ78_001705	ASZ78_012114	A0A226MHK7	A0A226MW02	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Ephrin RBD domain-containing protein; Belongs to the ephrin family.	0.690
ASZ78_001705	ASZ78_013803	A0A226MHK7	A0A226MXN6	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Ig-like domain-containing protein.	0.689
ASZ78_001705	ASZ78_014326	A0A226MHK7	A0A226MKF9	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Uncharacterized protein.	0.602
ASZ78_001805	ASZ78_007776	A0A226MHH2	A0A226MT22	PH domain-containing protein.	Uncharacterized protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.651
ASZ78_002142	ASZ78_005196	A0A226MFR7	A0A226M7B7	Uncharacterized protein.	Nanos-type domain-containing protein; Belongs to the nanos family.	0.404
ASZ78_002350	ASZ78_008430	A0A226NHP3	A0A226MHI9	PDZ domain-containing protein.	Neuropilin; Belongs to the neuropilin family.	0.507
ASZ78_002350	ASZ78_014326	A0A226NHP3	A0A226MKF9	PDZ domain-containing protein.	Uncharacterized protein.	0.666
ASZ78_004251	ASZ78_009680	A0A226NFQ2	A0A226ML99	Protein S100; Belongs to the S-100 family.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.565
ASZ78_004251	ASZ78_009682	A0A226NFQ2	A0A226MLH4	Protein S100; Belongs to the S-100 family.	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.565
ASZ78_004251	ASZ78_012354	A0A226NFQ2	A0A226MU20	Protein S100; Belongs to the S-100 family.	Uncharacterized protein; Belongs to the CD36 family.	0.433
ASZ78_004251	ASZ78_014001	A0A226NFQ2	A0A226NFA2	Protein S100; Belongs to the S-100 family.	Uncharacterized protein.	0.511
ASZ78_004262	ASZ78_004263	A0A226NFE0	A0A226NFH7	Sulfatase domain-containing protein.	Sulfatase domain-containing protein.	0.951
ASZ78_004263	ASZ78_004262	A0A226NFH7	A0A226NFE0	Sulfatase domain-containing protein.	Sulfatase domain-containing protein.	0.951
ASZ78_005072	ASZ78_011722	A0A226NCX7	A0A226MLL7	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.696
ASZ78_005196	ASZ78_002142	A0A226M7B7	A0A226MFR7	Nanos-type domain-containing protein; Belongs to the nanos family.	Uncharacterized protein.	0.404
ASZ78_007776	ASZ78_001705	A0A226MT22	A0A226MHK7	Uncharacterized protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.588
ASZ78_007776	ASZ78_001805	A0A226MT22	A0A226MHH2	Uncharacterized protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	PH domain-containing protein.	0.651
ASZ78_007776	ASZ78_009607	A0A226MT22	A0A226NNQ6	Uncharacterized protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	Uncharacterized protein.	0.594