(60 nodes) L-amino acid transport network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_002561	Uncharacterized protein. (322 aa)
	ASZ78_001298	Uncharacterized protein. (101 aa)
	ASZ78_002699	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (591 aa)
	ASZ78_013090	Amino acid transporter. (529 aa)
	ASZ78_010717	Uncharacterized protein. (185 aa)
	ASZ78_016710	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (145 aa)
	ASZ78_016711	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (289 aa)
	ASZ78_014577	PRA1 family protein. (188 aa)
	ASZ78_010370	Uncharacterized protein. (503 aa)
	ASZ78_011382	Uncharacterized protein. (395 aa)
	ASZ78_015744	Uncharacterized protein. (424 aa)
	ASZ78_004871	Uncharacterized protein. (500 aa)
	ASZ78_004860	Uncharacterized protein. (421 aa)
	ASZ78_005774	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (287 aa)
	ASZ78_006368	Aa_trans domain-containing protein. (269 aa)
	ASZ78_004796	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (636 aa)
	ASZ78_004467	Uncharacterized protein. (322 aa)
	ASZ78_012098	Uncharacterized protein. (457 aa)
	ASZ78_008113	Amino acid transporter. (294 aa)
	ASZ78_008124	Amino acid transporter. (581 aa)
	ASZ78_008115	Amino acid transporter. (244 aa)
	ASZ78_001168	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (365 aa)
	ASZ78_016922	Uncharacterized protein. (503 aa)
	ASZ78_016923	Aa_trans domain-containing protein. (486 aa)
	ASZ78_016924	Aa_trans domain-containing protein. (336 aa)
	ASZ78_004075	Uncharacterized protein. (515 aa)
	ASZ78_016925	Aa_trans domain-containing protein. (106 aa)
	ASZ78_003873	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (309 aa)
	ASZ78_005438	Aa_trans domain-containing protein. (521 aa)
	ASZ78_001921	Uncharacterized protein. (481 aa)
	ASZ78_006509	Amino acid transporter. (558 aa)
	ASZ78_009983	Uncharacterized protein. (212 aa)
	ASZ78_005155	Uncharacterized protein. (559 aa)
	ASZ78_016041	Amino acid transporter. (414 aa)
	ASZ78_008326	Uncharacterized protein. (203 aa)
	ASZ78_008327	Uncharacterized protein. (315 aa)
	ASZ78_005291	MFS domain-containing protein. (587 aa)
	ASZ78_014830	Aamy domain-containing protein. (688 aa)
	ASZ78_002742	Uncharacterized protein. (282 aa)
	ASZ78_012523	Uncharacterized protein. (564 aa)
	ASZ78_006934	Aa_trans domain-containing protein. (508 aa)
	ASZ78_009489	Aa_trans domain-containing protein. (422 aa)
	ASZ78_000228	Uncharacterized protein. (467 aa)
	ASZ78_000229	Uncharacterized protein. (145 aa)
	ASZ78_016403	Uncharacterized protein. (107 aa)
	ASZ78_016401	Aa_trans domain-containing protein. (289 aa)
	ASZ78_000611	Aa_trans domain-containing protein. (149 aa)
	ASZ78_000735	Uncharacterized protein. (464 aa)
	ASZ78_000280	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (183 aa)
	ASZ78_000279	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (161 aa)
	ASZ78_008003	AA_permease_C domain-containing protein. (624 aa)
	ASZ78_012374	Uncharacterized protein. (484 aa)
	ASZ78_001482	MFS domain-containing protein. (365 aa)
	ASZ78_013488	Aa_trans domain-containing protein. (1115 aa)
	ASZ78_003348	Aa_trans domain-containing protein. (406 aa)
	ASZ78_003347	Uncharacterized protein. (503 aa)
	ASZ78_006193	Serine protease; Belongs to the peptidase S1B family. (971 aa)
	ASZ78_013529	Amino acid transporter. (544 aa)
	ASZ78_016495	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (292 aa)
	ASZ78_011221	Uncharacterized protein. (501 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000228	ASZ78_003347	A0A226MQY5	A0A226MG99	Uncharacterized protein.	Uncharacterized protein.	0.553
ASZ78_000228	ASZ78_014830	A0A226MQY5	A0A226NDU3	Uncharacterized protein.	Aamy domain-containing protein.	0.969
ASZ78_000228	ASZ78_015744	A0A226MQY5	A0A226NPH1	Uncharacterized protein.	Uncharacterized protein.	0.908
ASZ78_000229	ASZ78_014830	A0A226MQR8	A0A226NDU3	Uncharacterized protein.	Aamy domain-containing protein.	0.969
ASZ78_000279	ASZ78_000280	A0A226MJ09	A0A226MJ41	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.926
ASZ78_000280	ASZ78_000279	A0A226MJ41	A0A226MJ09	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.926
ASZ78_000611	ASZ78_000735	A0A226MP40	A0A226MKG0	Aa_trans domain-containing protein.	Uncharacterized protein.	0.542
ASZ78_000735	ASZ78_000611	A0A226MKG0	A0A226MP40	Uncharacterized protein.	Aa_trans domain-containing protein.	0.542
ASZ78_000735	ASZ78_006509	A0A226MKG0	A0A226N7C7	Uncharacterized protein.	Amino acid transporter.	0.446
ASZ78_000735	ASZ78_008115	A0A226MKG0	A0A226MY90	Uncharacterized protein.	Amino acid transporter.	0.425
ASZ78_000735	ASZ78_008124	A0A226MKG0	A0A226MXQ1	Uncharacterized protein.	Amino acid transporter.	0.448
ASZ78_000735	ASZ78_009489	A0A226MKG0	A0A226MRC6	Uncharacterized protein.	Aa_trans domain-containing protein.	0.487
ASZ78_000735	ASZ78_011382	A0A226MKG0	A0A226NPF4	Uncharacterized protein.	Uncharacterized protein.	0.561
ASZ78_000735	ASZ78_013090	A0A226MKG0	A0A226NHL0	Uncharacterized protein.	Amino acid transporter.	0.411
ASZ78_000735	ASZ78_013488	A0A226MKG0	A0A226MH98	Uncharacterized protein.	Aa_trans domain-containing protein.	0.570
ASZ78_000735	ASZ78_013529	A0A226MKG0	A0A226MEC0	Uncharacterized protein.	Amino acid transporter.	0.449
ASZ78_000735	ASZ78_016401	A0A226MKG0	A0A226MPH4	Uncharacterized protein.	Aa_trans domain-containing protein.	0.537
ASZ78_000735	ASZ78_016403	A0A226MKG0	A0A226MPQ1	Uncharacterized protein.	Uncharacterized protein.	0.537
ASZ78_000735	ASZ78_016923	A0A226MKG0	A0A226N2I6	Uncharacterized protein.	Aa_trans domain-containing protein.	0.505
ASZ78_001168	ASZ78_002742	A0A226MZ65	A0A226NE51	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.900