(21 nodes) Secondary metabolic process network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_009348	Uncharacterized protein. (575 aa)
	ASZ78_014569	Uncharacterized protein. (448 aa)
	ASZ78_002797	2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; Converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). Belongs to the metallo-dependent hydrolases superfamily. (379 aa)
	ASZ78_006003	BH4_2 domain-containing protein. (226 aa)
	ASZ78_002778	BZIP domain-containing protein. (582 aa)
	ASZ78_005072	Uncharacterized protein; Belongs to the cytochrome P450 family. (542 aa)
	ASZ78_005287	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (135 aa)
	ASZ78_000220	Uncharacterized protein; Belongs to the transient receptor (TC 1.A.4) family. (746 aa)
	ASZ78_009979	Aldo_ket_red domain-containing protein. (326 aa)
	ASZ78_011194	Uncharacterized protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (423 aa)
	ASZ78_003086	Uncharacterized protein. (87 aa)
	ASZ78_004467	Uncharacterized protein. (322 aa)
	ASZ78_012552	Uncharacterized protein. (491 aa)
	ASZ78_008462	Uncharacterized protein. (552 aa)
	ASZ78_010467	Methyltranfer_dom domain-containing protein. (319 aa)
	ASZ78_005753	Uncharacterized protein. (953 aa)
	ASZ78_008296	C3H1-type domain-containing protein. (229 aa)
	ASZ78_004315	CitMHS domain-containing protein. (710 aa)
	ASZ78_011722	Uncharacterized protein; Belongs to the cytochrome P450 family. (517 aa)
	ASZ78_006253	Uncharacterized protein. (237 aa)
	ASZ78_016456	Uncharacterized protein; Belongs to the cytochrome P450 family. (565 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_002778	ASZ78_006003	A0A226NEY4	A0A226NIW8	BZIP domain-containing protein.	BH4_2 domain-containing protein.	0.408
ASZ78_002797	ASZ78_006253	A0A226NJ35	A0A226MKF4	2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; Converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). Belongs to the metallo-dependent hydrolases superfamily.	Uncharacterized protein.	0.483
ASZ78_002797	ASZ78_009979	A0A226NJ35	A0A226N9V8	2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; Converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). Belongs to the metallo-dependent hydrolases superfamily.	Aldo_ket_red domain-containing protein.	0.697
ASZ78_002797	ASZ78_014569	A0A226NJ35	A0A226NL45	2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; Converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). Belongs to the metallo-dependent hydrolases superfamily.	Uncharacterized protein.	0.483
ASZ78_003086	ASZ78_004315	A0A226MXP4	A0A226MM04	Uncharacterized protein.	CitMHS domain-containing protein.	0.511
ASZ78_004315	ASZ78_003086	A0A226MM04	A0A226MXP4	CitMHS domain-containing protein.	Uncharacterized protein.	0.511
ASZ78_004315	ASZ78_008462	A0A226MM04	A0A226MSN3	CitMHS domain-containing protein.	Uncharacterized protein.	0.546
ASZ78_004315	ASZ78_009348	A0A226MM04	A0A226N516	CitMHS domain-containing protein.	Uncharacterized protein.	0.534
ASZ78_004315	ASZ78_011194	A0A226MM04	A0A226N6P4	CitMHS domain-containing protein.	Uncharacterized protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.761
ASZ78_005072	ASZ78_011722	A0A226NCX7	A0A226MLL7	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.696
ASZ78_005072	ASZ78_014569	A0A226NCX7	A0A226NL45	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.415
ASZ78_005072	ASZ78_016456	A0A226NCX7	A0A226MJL5	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.920
ASZ78_006003	ASZ78_002778	A0A226NIW8	A0A226NEY4	BH4_2 domain-containing protein.	BZIP domain-containing protein.	0.408
ASZ78_006253	ASZ78_002797	A0A226MKF4	A0A226NJ35	Uncharacterized protein.	2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; Converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). Belongs to the metallo-dependent hydrolases superfamily.	0.483
ASZ78_006253	ASZ78_014569	A0A226MKF4	A0A226NL45	Uncharacterized protein.	Uncharacterized protein.	0.655
ASZ78_008462	ASZ78_004315	A0A226MSN3	A0A226MM04	Uncharacterized protein.	CitMHS domain-containing protein.	0.546
ASZ78_008462	ASZ78_011194	A0A226MSN3	A0A226N6P4	Uncharacterized protein.	Uncharacterized protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.567
ASZ78_008462	ASZ78_012552	A0A226MSN3	A0A226MV85	Uncharacterized protein.	Uncharacterized protein.	0.592
ASZ78_009348	ASZ78_004315	A0A226N516	A0A226MM04	Uncharacterized protein.	CitMHS domain-containing protein.	0.534
ASZ78_009348	ASZ78_011194	A0A226N516	A0A226N6P4	Uncharacterized protein.	Uncharacterized protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.619