(5 nodes) Growth hormone secretion network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_016656	Uncharacterized protein. (597 aa)
	ASZ78_003651	G_PROTEIN_RECEP_F2_3 domain-containing protein. (189 aa)
	ASZ78_008182	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (347 aa)
	ASZ78_012997	GLUCAGON domain-containing protein. (172 aa)
	ASZ78_016657	NR LBD domain-containing protein. (103 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_003651	ASZ78_008182	A0A226N9C5	A0A226NBI4	G_PROTEIN_RECEP_F2_3 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.461
ASZ78_003651	ASZ78_012997	A0A226N9C5	A0A226NFJ4	G_PROTEIN_RECEP_F2_3 domain-containing protein.	GLUCAGON domain-containing protein.	0.999
ASZ78_008182	ASZ78_003651	A0A226NBI4	A0A226N9C5	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F2_3 domain-containing protein.	0.461
ASZ78_008182	ASZ78_012997	A0A226NBI4	A0A226NFJ4	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	GLUCAGON domain-containing protein.	0.527
ASZ78_012997	ASZ78_003651	A0A226NFJ4	A0A226N9C5	GLUCAGON domain-containing protein.	G_PROTEIN_RECEP_F2_3 domain-containing protein.	0.999
ASZ78_012997	ASZ78_008182	A0A226NFJ4	A0A226NBI4	GLUCAGON domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.527
ASZ78_016656	ASZ78_016657	A0A226NKP7	A0A226NKM0	Uncharacterized protein.	NR LBD domain-containing protein.	0.900
ASZ78_016657	ASZ78_016656	A0A226NKM0	A0A226NKP7	NR LBD domain-containing protein.	Uncharacterized protein.	0.900