(51 nodes) Regulation of type I interferon production network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_016494	IRF tryptophan pentad repeat domain-containing protein. (509 aa)
	ASZ78_003352	Uncharacterized protein. (482 aa)
	ASZ78_004045	IRF tryptophan pentad repeat domain-containing protein. (461 aa)
	ASZ78_012567	Uncharacterized protein. (658 aa)
	ASZ78_015469	TIR domain-containing protein. (310 aa)
	ASZ78_016954	RING-type domain-containing protein. (539 aa)
	ASZ78_013142	IRF tryptophan pentad repeat domain-containing protein. (415 aa)
	ASZ78_004928	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (531 aa)
	ASZ78_013118	TIR domain-containing protein; Belongs to the Toll-like receptor family. (896 aa)
	ASZ78_007244	TNF receptor-associated factor. (433 aa)
	ASZ78_008516	Uncharacterized protein. (164 aa)
	ASZ78_002365	Uncharacterized protein; Belongs to the chaperonin (HSP60) family. (573 aa)
	ASZ78_005453	IRF tryptophan pentad repeat domain-containing protein. (425 aa)
	ASZ78_016856	Uncharacterized protein. (467 aa)
	ASZ78_001964	Uncharacterized protein. (208 aa)
	ASZ78_013308	Uncharacterized protein. (442 aa)
	ASZ78_008099	Uncharacterized protein. (601 aa)
	ASZ78_000954	Uncharacterized protein. (1120 aa)
	ASZ78_007057	CARD_2 domain-containing protein. (586 aa)
	ASZ78_007905	Uncharacterized protein. (145 aa)
	ASZ78_007906	Uncharacterized protein. (233 aa)
	ASZ78_011071	G-patch domain-containing protein. (495 aa)
	ASZ78_007911	Uncharacterized protein. (382 aa)
	ASZ78_000789	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)
	ASZ78_014940	Uncharacterized protein. (117 aa)
	ASZ78_010421	TPR_REGION domain-containing protein. (583 aa)
	ASZ78_015172	G_PROTEIN_RECEP_F1_2 domain-containing protein. (265 aa)
	ASZ78_015362	Uncharacterized protein. (376 aa)
	ASZ78_009473	NACHT domain-containing protein. (937 aa)
	ASZ78_014512	Uncharacterized protein. (698 aa)
	ASZ78_016936	Mab-21 domain-containing protein. (313 aa)
	ASZ78_001024	DNA polymerase. (1379 aa)
	ASZ78_000379	Uncharacterized protein. (707 aa)
	ASZ78_009012	Uncharacterized protein. (674 aa)
	ASZ78_016203	Uncharacterized protein. (2373 aa)
	ASZ78_016284	Uncharacterized protein. (655 aa)
	ASZ78_014114	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (304 aa)
	ASZ78_004410	Uncharacterized protein. (255 aa)
	ASZ78_004411	RING-type domain-containing protein. (156 aa)
	ASZ78_007328	TIR domain-containing protein; Belongs to the Toll-like receptor family. (1357 aa)
	ASZ78_004663	Uncharacterized protein. (689 aa)
	ASZ78_004662	Uncharacterized protein. (250 aa)
	ASZ78_005479	IRF tryptophan pentad repeat domain-containing protein. (413 aa)
	ASZ78_006600	Autophagy protein 5; Involved in autophagic vesicle formation. (200 aa)
	ASZ78_005865	Uncharacterized protein. (205 aa)
	ASZ78_015319	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (314 aa)
	ASZ78_005863	Uncharacterized protein. (244 aa)
	ASZ78_000406	N_BRCA1_IG domain-containing protein. (237 aa)
	ASZ78_015703	Uncharacterized protein; Belongs to the RNA polymerase beta chain family. (456 aa)
	ASZ78_011374	Uncharacterized protein. (930 aa)
	ASZ78_015702	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (657 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000379	ASZ78_009012	A0A226N6I9	A0A226N838	Uncharacterized protein.	Uncharacterized protein.	0.506
ASZ78_000379	ASZ78_011374	A0A226N6I9	A0A226NP86	Uncharacterized protein.	Uncharacterized protein.	0.480
ASZ78_000379	ASZ78_016494	A0A226N6I9	A0A226MDT6	Uncharacterized protein.	IRF tryptophan pentad repeat domain-containing protein.	0.641
ASZ78_000379	ASZ78_016936	A0A226N6I9	A0A226N527	Uncharacterized protein.	Mab-21 domain-containing protein.	0.554
ASZ78_000406	ASZ78_006600	A0A226NMP5	A0A226NKC4	N_BRCA1_IG domain-containing protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.408
ASZ78_000789	ASZ78_002365	A0A226MZ71	A0A226MP69	Glyceraldehyde-3-phosphate dehydrogenase.	Uncharacterized protein; Belongs to the chaperonin (HSP60) family.	0.644
ASZ78_000789	ASZ78_006600	A0A226MZ71	A0A226NKC4	Glyceraldehyde-3-phosphate dehydrogenase.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.487
ASZ78_000789	ASZ78_007244	A0A226MZ71	A0A226MNP0	Glyceraldehyde-3-phosphate dehydrogenase.	TNF receptor-associated factor.	0.752
ASZ78_000789	ASZ78_013118	A0A226MZ71	A0A226MN15	Glyceraldehyde-3-phosphate dehydrogenase.	TIR domain-containing protein; Belongs to the Toll-like receptor family.	0.505
ASZ78_000789	ASZ78_015702	A0A226MZ71	A0A226NPJ4	Glyceraldehyde-3-phosphate dehydrogenase.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.455
ASZ78_000789	ASZ78_015703	A0A226MZ71	A0A226NNE7	Glyceraldehyde-3-phosphate dehydrogenase.	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	0.455
ASZ78_000789	ASZ78_016494	A0A226MZ71	A0A226MDT6	Glyceraldehyde-3-phosphate dehydrogenase.	IRF tryptophan pentad repeat domain-containing protein.	0.571
ASZ78_000954	ASZ78_006600	A0A226MXR7	A0A226NKC4	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.570
ASZ78_000954	ASZ78_007057	A0A226MXR7	A0A226MY38	Uncharacterized protein.	CARD_2 domain-containing protein.	0.722
ASZ78_000954	ASZ78_007244	A0A226MXR7	A0A226MNP0	Uncharacterized protein.	TNF receptor-associated factor.	0.456
ASZ78_000954	ASZ78_014940	A0A226MXR7	A0A226N0C9	Uncharacterized protein.	Uncharacterized protein.	0.569
ASZ78_001024	ASZ78_009012	A0A226N5Z8	A0A226N838	DNA polymerase.	Uncharacterized protein.	0.441
ASZ78_001024	ASZ78_011374	A0A226N5Z8	A0A226NP86	DNA polymerase.	Uncharacterized protein.	0.441
ASZ78_001964	ASZ78_013118	A0A226MUY3	A0A226MN15	Uncharacterized protein.	TIR domain-containing protein; Belongs to the Toll-like receptor family.	0.408
ASZ78_001964	ASZ78_015702	A0A226MUY3	A0A226NPJ4	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.447