(11 nodes) Positive regulation of natural killer cell activation network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_011206	Uncharacterized protein. (107 aa)
	ASZ78_006829	Uncharacterized protein. (415 aa)
	ASZ78_006838	Uncharacterized protein. (685 aa)
	ASZ78_015459	Uncharacterized protein. (682 aa)
	IL12B	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily. (293 aa)
	ASZ78_007714	Sushi domain-containing protein. (138 aa)
	ASZ78_003119	Uncharacterized protein. (154 aa)
	ASZ78_007652	Interleukin-18. (196 aa)
	ASZ78_008906	Uncharacterized protein. (711 aa)
	ASZ78_006872	Interleukin; Belongs to the IL-15/IL-21 family. (170 aa)
	IL12A	Interleukin-12 subunit alpha; Belongs to the IL-6 superfamily. (206 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_003119	ASZ78_011206	A0A226MHP0	A0A226N6V6	Uncharacterized protein.	Uncharacterized protein.	0.934
ASZ78_006872	ASZ78_007652	A0A226N5X6	A0A226MUT1	Interleukin; Belongs to the IL-15/IL-21 family.	Interleukin-18.	0.480
ASZ78_006872	ASZ78_007714	A0A226N5X6	A0A226MRV9	Interleukin; Belongs to the IL-15/IL-21 family.	Sushi domain-containing protein.	0.995
ASZ78_007652	ASZ78_006872	A0A226MUT1	A0A226N5X6	Interleukin-18.	Interleukin; Belongs to the IL-15/IL-21 family.	0.480
ASZ78_007714	ASZ78_006872	A0A226MRV9	A0A226N5X6	Sushi domain-containing protein.	Interleukin; Belongs to the IL-15/IL-21 family.	0.995
ASZ78_011206	ASZ78_003119	A0A226N6V6	A0A226MHP0	Uncharacterized protein.	Uncharacterized protein.	0.934