(9 nodes) Maintenance of mitotic sister chromatid cohesion network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_013089	Nipped-B protein. (2121 aa)
	ASZ78_015498	Uncharacterized protein. (84 aa)
	ASZ78_015497	Uncharacterized protein. (106 aa)
	ASZ78_012441	DUF3452 domain-containing protein. (326 aa)
	ASZ78_001339	Uncharacterized protein. (292 aa)
	ASZ78_006531	Uncharacterized protein. (224 aa)
	ASZ78_012442	RB_A domain-containing protein. (205 aa)
	ASZ78_013948	Uncharacterized protein. (209 aa)
	ASZ78_015499	Uncharacterized protein. (96 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_001339	ASZ78_006531	A0A226MCB3	A0A226MCW7	Uncharacterized protein.	Uncharacterized protein.	0.899
ASZ78_001339	ASZ78_015497	A0A226MCB3	A0A226MDY2	Uncharacterized protein.	Uncharacterized protein.	0.923
ASZ78_001339	ASZ78_015498	A0A226MCB3	A0A226MDD4	Uncharacterized protein.	Uncharacterized protein.	0.899
ASZ78_006531	ASZ78_001339	A0A226MCW7	A0A226MCB3	Uncharacterized protein.	Uncharacterized protein.	0.899
ASZ78_006531	ASZ78_013089	A0A226MCW7	A0A226NH20	Uncharacterized protein.	Nipped-B protein.	0.883
ASZ78_006531	ASZ78_015497	A0A226MCW7	A0A226MDY2	Uncharacterized protein.	Uncharacterized protein.	0.888
ASZ78_006531	ASZ78_015498	A0A226MCW7	A0A226MDD4	Uncharacterized protein.	Uncharacterized protein.	0.888
ASZ78_006531	ASZ78_015499	A0A226MCW7	A0A226MDC5	Uncharacterized protein.	Uncharacterized protein.	0.925
ASZ78_012441	ASZ78_012442	A0A226MGQ6	A0A226MGR3	DUF3452 domain-containing protein.	RB_A domain-containing protein.	0.900
ASZ78_012442	ASZ78_012441	A0A226MGR3	A0A226MGQ6	RB_A domain-containing protein.	DUF3452 domain-containing protein.	0.900
ASZ78_013089	ASZ78_006531	A0A226NH20	A0A226MCW7	Nipped-B protein.	Uncharacterized protein.	0.883
ASZ78_015497	ASZ78_001339	A0A226MDY2	A0A226MCB3	Uncharacterized protein.	Uncharacterized protein.	0.923
ASZ78_015497	ASZ78_006531	A0A226MDY2	A0A226MCW7	Uncharacterized protein.	Uncharacterized protein.	0.888
ASZ78_015497	ASZ78_015498	A0A226MDY2	A0A226MDD4	Uncharacterized protein.	Uncharacterized protein.	0.922
ASZ78_015498	ASZ78_001339	A0A226MDD4	A0A226MCB3	Uncharacterized protein.	Uncharacterized protein.	0.899
ASZ78_015498	ASZ78_006531	A0A226MDD4	A0A226MCW7	Uncharacterized protein.	Uncharacterized protein.	0.888
ASZ78_015498	ASZ78_015497	A0A226MDD4	A0A226MDY2	Uncharacterized protein.	Uncharacterized protein.	0.922
ASZ78_015499	ASZ78_006531	A0A226MDC5	A0A226MCW7	Uncharacterized protein.	Uncharacterized protein.	0.925