(27 nodes) Somatic stem cell population maintenance network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_008588	Uncharacterized protein. (239 aa)
	ASZ78_001339	Uncharacterized protein. (292 aa)
	ASZ78_006531	Uncharacterized protein. (224 aa)
	ASZ78_015499	Uncharacterized protein. (96 aa)
	ASZ78_015498	Uncharacterized protein. (84 aa)
	ASZ78_004922	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (205 aa)
	ASZ78_015497	Uncharacterized protein. (106 aa)
	ASZ78_009236	Homeobox domain-containing protein. (278 aa)
	ASZ78_010287	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1426 aa)
	ASZ78_003498	Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. (230 aa)
	ASZ78_007160	YL1_C domain-containing protein. (364 aa)
	ASZ78_015163	Mediator of RNA polymerase II transcription subunit 21; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (81 aa)
	ASZ78_013089	Nipped-B protein. (2121 aa)
	ASZ78_003952	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (119 aa)
	ASZ78_003951	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (219 aa)
	ASZ78_008243	HMG box domain-containing protein. (496 aa)
	ASZ78_011734	Uncharacterized protein. (222 aa)
	ASZ78_005984	Noggin; Belongs to the noggin family. (223 aa)
	MED17	Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (516 aa)
	ASZ78_002473	Uncharacterized protein. (893 aa)
	ASZ78_009161	Uncharacterized protein. (831 aa)
	ASZ78_012616	Uncharacterized protein. (217 aa)
	ASZ78_009567	Uncharacterized protein. (345 aa)
	ASZ78_012615	Uncharacterized protein. (1089 aa)
	ASZ78_003193	Uncharacterized protein. (1103 aa)
	ASZ78_006814	Uncharacterized protein. (172 aa)
	MED15	Mediator of RNA polymerase II transcription subunit 15; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (270 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_001339	ASZ78_006531	A0A226MCB3	A0A226MCW7	Uncharacterized protein.	Uncharacterized protein.	0.899
ASZ78_001339	ASZ78_015497	A0A226MCB3	A0A226MDY2	Uncharacterized protein.	Uncharacterized protein.	0.923
ASZ78_001339	ASZ78_015498	A0A226MCB3	A0A226MDD4	Uncharacterized protein.	Uncharacterized protein.	0.899
ASZ78_003498	ASZ78_006814	A0A226MHN1	A0A226N6M4	Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery.	Uncharacterized protein.	0.998
ASZ78_003498	ASZ78_009567	A0A226MHN1	A0A226NNL8	Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery.	Uncharacterized protein.	0.998
ASZ78_003498	ASZ78_010287	A0A226MHN1	A0A226NLW8	Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery.	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.999
ASZ78_003498	ASZ78_015163	A0A226MHN1	A0A226MMQ1	Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery.	Mediator of RNA polymerase II transcription subunit 21; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.997
ASZ78_003498	MED15	A0A226MHN1	A0A226NAW3	Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery.	Mediator of RNA polymerase II transcription subunit 15; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.993
ASZ78_003498	MED17	A0A226MHN1	A0A226MUH2	Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery.	Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.999
ASZ78_003951	ASZ78_003952	A0A226MND9	A0A226MN36	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.635
ASZ78_003951	ASZ78_012615	A0A226MND9	A0A226MWM0	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Uncharacterized protein.	0.929
ASZ78_003951	ASZ78_012616	A0A226MND9	A0A226MWI5	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Uncharacterized protein.	0.716
ASZ78_003952	ASZ78_003951	A0A226MN36	A0A226MND9	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.635
ASZ78_003952	ASZ78_012615	A0A226MN36	A0A226MWM0	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Uncharacterized protein.	0.929
ASZ78_003952	ASZ78_012616	A0A226MN36	A0A226MWI5	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Uncharacterized protein.	0.716
ASZ78_004922	ASZ78_008243	A0A226MDS5	A0A226MR05	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	HMG box domain-containing protein.	0.574
ASZ78_004922	ASZ78_009236	A0A226MDS5	A0A226MG96	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Homeobox domain-containing protein.	0.531
ASZ78_006531	ASZ78_001339	A0A226MCW7	A0A226MCB3	Uncharacterized protein.	Uncharacterized protein.	0.899
ASZ78_006531	ASZ78_013089	A0A226MCW7	A0A226NH20	Uncharacterized protein.	Nipped-B protein.	0.883
ASZ78_006531	ASZ78_015497	A0A226MCW7	A0A226MDY2	Uncharacterized protein.	Uncharacterized protein.	0.888